LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g1235	ATGTCATCACTCTATTTATCCAAAAATAAAGAAACCAAGTTGAACCAAAATAGAAGTGTTCAATGCTTAGAAAACTTCAACTATTTCAGGACCAATAATGCACCTTCAAAAGGAAGCACAAATTTCCTAGCCTATAAATACAATTACTTCAACACAAGTTCTCTTCACCAACATACAACAATGGATAGTATACCATACATGCATCAAATGGTTTCTAGCTTGGTTTTGATAATTCTATCTATTTCTTCATTGGCTTCAGCATCTCTGCAGGTGGGTTTCTATAGCTACTCATGTCCATCTGCTGAGGCAATAGTGAGAAGTGCAATTGACAAAGCTGTTTCACTCAATCCTGGTATAGGTGCTGGATTGATTAGAATGCATTTTCATGATTGCTTTGTGAGGGGTTGTGATGCTTCTGTGTTACTAGCATCAACACCAGGAAATCCAATAGCTGAGAAAGACAACTTTATCAACAATCCAAGTCTACATGGATTTGAGGTAATTGATGAGGCCAAGGCTCAATTAGAAGTCGTATGTCCGCAAACAGTATCGTGTGCGGACATTCTTACATTTGCTACACGAGACAGTATTCTCAAACTTAGTGGTGGCACTATAAATTACGATGTACCTTCAGGACGGAGGGATGGCCGTGTCTCAATCAGCGACGAAGTGCCAAAAAATATACCTTCACCTTTCCTCAATGCTGACCAACTTATAGCAAATTTTGCACAAAAAGGTTTGTCAATTGATGAAATGGTTACACTCTCAGGAGCACATTCAATTGGTGTATCACATTGTTCTTCTTTCTCTAATCGTTTATATTCATTTAGTGATACAATTTCTCAAGATCCTTCTATGGACCCTTCATTTGCTGAATCTTTGAAAACAAAGTGTCCACCACCACCAAGTAACACTAATCCAATAGTGATGCTTGATGTTGCTACTCCTAATCGTTTGGACAATTTGTATTATGAGGGATTGATTAACCATCGTGGATTGTTGACTTCAGATCAAACCTTGTTGAGTAGTCAATCTACACAAGAAAGTGTGCTAAGTAATGCTAATTATGGTTCAAATTGGGCTACTAAGTTTGCACAAGCAATGGTGCATATGGGTTCTATTGATGTGTTAAGTGGCTATGATGGTGAGATTAGGAAACACTGCAGCTTTGTCAATTAG	1179	0.38	MSSLYLSKNKETKLNQNRSVQCLENFNYFRTNNAPSKGSTNFLAYKYNYFNTSSLHQHTTMDSIPYMHQMVSSLVLIILSISSLASASLQVGFYSYSCPSAEAIVRSAIDKAVSLNPGIGAGLIRMHFHDCFVRGCDASVLLASTPGNPIAEKDNFINNPSLHGFEVIDEAKAQLEVVCPQTVSCADILTFATRDSILKLSGGTINYDVPSGRRDGRVSISDEVPKNIPSPFLNADQLIANFAQKGLSIDEMVTLSGAHSIGVSHCSSFSNRLYSFSDTISQDPSMDPSFAESLKTKCPPPPSNTNPIVMLDVATPNRLDNLYYEGLINHRGLLTSDQTLLSSQSTQESVLSNANYGSNWATKFAQAMVHMGSIDVLSGYDGEIRKHCSFVN*	393

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g1235	392	SUPERFAMILY	Heme-dependent peroxidases	89	392	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g1235	392	Pfam	Peroxidase	105	352	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g1235	392	ProSitePatterns	Peroxidases proximal heme-ligand signature.	251	261	IPR019793	-
	Mtr1g1235	392	PRINTS	Haem peroxidase superfamily signature	120	134	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g1235	392	PRINTS	Haem peroxidase superfamily signature	183	200	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g1235	392	PRINTS	Haem peroxidase superfamily signature	203	215	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g1235	392	PRINTS	Haem peroxidase superfamily signature	251	266	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g1235	392	PRINTS	Haem peroxidase superfamily signature	312	327	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g1235	392	PRINTS	Plant peroxidase signature	98	117	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Mtr1g1235	392	PRINTS	Plant peroxidase signature	122	142	IPR000823	GO:0004601\|GO:0006979\|GO:0020037

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g1235	Mtr-Chr1	14615419	14617665	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g1235	74	392	Peroxidase	AT4G11290	45.370	6.19e-91	275

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g1235	K00430		-	gmx:100786791	460.299

Showing 1 to 1 of 1 entries