Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1234 ATGTCTAACCACAAGGAAACAACAACTATCACCACAACAACCGATCTAGTAGAACCCACTTCTCAAAACGCTATAACAGTAAAAAAACCGCCGTCAAAAGACCGTCACAGTAAAGTAGACGGACGAGGAAGACGCATAAGAATGCCTATAATTTGCGCCGCACGTGTTTTCCAGTTAACACGTGAGCTTGGTCATAAATCCGACGGTCAAACTATTGAATGGCTTCTCCGTCAAGCTGAACCGTCGATCATCGCCGCCACCGGTACCGGAACTACTCCTGCTTCTTTCTCTTCGCTTTCTGAGCATAAACCTTTTCTTCAACCTTCTCCTTTTATTCTTGGTAAACGTTTACGTGATGATGATGGTGATGCTGTTTCGGTTGCCGCACCTACTGCTCCGCCGGGGTTGTGGCGGCCGGATTTTGCTCAGCTTTGGAGCTTTGCTGCGGCTGCTCAAACTCCGCCGGAAGGTTTTTCTGTTTCTCAGCATAATTCATTGTTTCATCATCAACAGCAACAACAACAACAACAGCACCAGCAACAGCAACAACAGCACCACCACCAGCAGCATCACCAGCAGCAACAAGGCTCTATGGGTGAAGCTTCCGCGGCGAGGTTAGGGAATTATCTTCCTGGTCATCTGAATTTGTTGGCTTCATTGTCTGGTGGGAATGGAAATTCTGGTCGTGGAGATGATGAAGATCGTTGA 708 0.476 MSNHKETTTITTTTDLVEPTSQNAITVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFLQPSPFILGKRLRDDDGDAVSVAAPTAPPGLWRPDFAQLWSFAAAAQTPPEGFSVSQHNSLFHHQQQQQQQQHQQQQQQHHHQQHHQQQQGSMGEASAARLGNYLPGHLNLLASLSGGNGNSGRGDDEDR* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1234 235 MobiDBLite consensus disorder prediction 155 201 - -
Mtr1g1234 235 Pfam TCP family transcription factor 32 193 IPR017887 -
Mtr1g1234 235 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 177 231 - -
Mtr1g1234 235 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 177 - -
Mtr1g1234 235 MobiDBLite consensus disorder prediction 1 42 - -
Mtr1g1234 235 ProSiteProfiles TCP domain profile. 32 86 IPR017887 -
Mtr1g1234 235 MobiDBLite consensus disorder prediction 1 28 - -
Mtr1g1234 235 MobiDBLite consensus disorder prediction 155 235 - -
Mtr1g1234 235 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 177 231 IPR005333 GO:0003700
Mtr1g1234 235 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 177 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1234 Mtr-Chr1 14608413 14610185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1234 10 235 TCP Transcription Factor Family AT5G23280 55.512 1.55e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Mtr1g1234 TCP 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1234 K16221 - gmx:100795254 248.825