Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1226 ATGGGGCGTGGAAAGATTGAGATTAAGAAGATTCAAAACAAAACCACAAGGCAAGTGACATTTTCCAAAAGAAGAACTGGATTGTTGAAGAAGACTCATGAGCTATCAGTGTTATGTGAAGCTCAGATTGGACTAATAATTTTCTCGAGCACTGGAAAACTCTCCCAATATTGCTCTGATTCCACAAGGATGGACCAAATCATTGAAAGGTACGAGAGAAGTACAGGTAAACGCATTATGGCTGAACATGATGATCATCAGATTCATCCCAGGGAATTAGAAATGTTCCATGACATGGCAATGCTGAGGCAGGAAAGTCTTCGTCTTGAATTGGGAATTCAACGCTATCTTGGAGATGACATGAAAGATTTACAGTTTGATGACTTGAGTAAAATTGAACATGAATTAGAGATCTCTCTTGCAAAAGTTCGAAACCGTCAGAATGAGCTCATGCAACAACAAATGGAGAATCTCCAAAGGAAGGAAAGAATCTTGCAAGATGAAAACATGAATTTATCCAACTGGGAGCATAAGGCAGTGATGGAAAACAAGGCTGTGATGGATCAGTTTGCATTTTTTGAGGACCAACCACTTAGCAGGATCCTTCAACTTGCTGCACCTGTTAATCCCTATCTTCAGCTTGGTCAGCCAGTTTTTCAAGATTATAATCTCAAGACTAGGGACCTCGATCACCCTTAA 699 0.4006 MGRGKIEIKKIQNKTTRQVTFSKRRTGLLKKTHELSVLCEAQIGLIIFSSTGKLSQYCSDSTRMDQIIERYERSTGKRIMAEHDDHQIHPRELEMFHDMAMLRQESLRLELGIQRYLGDDMKDLQFDDLSKIEHELEISLAKVRNRQNELMQQQMENLQRKERILQDENMNLSNWEHKAVMENKAVMDQFAFFEDQPLSRILQLAAPVNPYLQLGQPVFQDYNLKTRDLDHP* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1226 232 Coils Coil 141 178 - -
Mtr1g1226 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr1g1226 232 ProSiteProfiles K-box domain profile. 92 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr1g1226 232 Pfam K-box region 93 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr1g1226 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr1g1226 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr1g1226 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr1g1226 232 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Mtr1g1226 232 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mtr1g1226 232 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 207 IPR031050 GO:0005634|GO:0048316
Mtr1g1226 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr1g1226 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr1g1226 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr1g1226 232 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Mtr1g1226 232 PANTHER MADS BOX PROTEIN 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1226 Mtr-Chr1 14534398 14540698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1226 1 182 MADS-box Gene Family AT5G23260 53.804 1.44e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr1g1226 K-box 3.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1226 - - gmx:100783876 276.174