Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1224 ATGTTTGCATGGCATGCAGAAGATCATTATTTGTACAGCATAAATTACCATCACTCAGGTGCAAATAAAACTTGGTATGGTGTGCCTGGTTCTGCAACCTCTCAAATTGAAAAGACTGTCTTGGATCATGTTTATTGCAACAAAGTCTTGATAGAACATGGAGAGAATGGGGCATTCCAATTTCTTGCACAAAAAACAACCATGTTCTCTCCTGATGTCTTGTTAGAACATAATGTGCCGGTTTACAAGGCGGTGCAAAAGCTAGGAGAGTTTGTTATCACCTTTCCAAATTCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCACTTGGGGCTGAAGCTAGCAAACGTTATTCACATCTCAAAATGGTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGAAGCATTGCTTATCTACAACTCCTCAAAAGATAGTGGTTACAAAATCAAACCTGAAGACACATCTTATCGAGCTATTGCACTGTCTTTCTTGCATCTTATTCAATTTTATAAGACATCACTATCGCGGTTCGACAGTTCGATAAAGCTTTCAAGCTATTCAAATACATCATTAGGTTCTGTGACATGCAGCCTCTGCAATAGGGATTGTTATGTAGCTTTTTTGTTGTGCAGGAAATGCTATTCCGATCCAATTTGCCTTTTCCATGAGATTGTGCCACAAAATTGTTTATGTGGGAGAGAACATACTGTTTTTAAGAGGAATGACATGTTGGAACTTGAAGATGCTGCCAAAAGTTTTCAACAGGAAAAAGAATGCATCAACGCGTTATCCTTAACAAATATATTCTCCTATAACATTAATGAATGCGTCAAAGAACACAAGAATAAAAATTGGCGTGACGAAAAAAGTGCTAGAAGAACTGTTAACTCGCTAGGCGCAACATCGAAACTGGGAACAAGAGTTGCGAACAACATCAAGCACACTGTTGAAAAGAATCAAAAGAAGCCAAAGAATCGTTGTAGAAACAATGTGTCTCCATCAGTGATGAGTACCAAAAGACAACGAGTCATTTATAACTTGAGAAAACATGAATCAGAACTGATAATCAAAGTTCCTGCAGTATCTTCCCTTTTGGCGACATCTGAAAAATCAAAGTAA 1164 0.3754 MFAWHAEDHYLYSINYHHSGANKTWYGVPGSATSQIEKTVLDHVYCNKVLIEHGENGAFQFLAQKTTMFSPDVLLEHNVPVYKAVQKLGEFVITFPNSYHAGFSHGFNCGEAVNFAIGDWFPLGAEASKRYSHLKMVPIIPYEELLCKEALLIYNSSKDSGYKIKPEDTSYRAIALSFLHLIQFYKTSLSRFDSSIKLSSYSNTSLGSVTCSLCNRDCYVAFLLCRKCYSDPICLFHEIVPQNCLCGREHTVFKRNDMLELEDAAKSFQQEKECINALSLTNIFSYNINECVKEHKNKNWRDEKSARRTVNSLGATSKLGTRVANNIKHTVEKNQKKPKNRCRNNVSPSVMSTKRQRVIYNLRKHESELIIKVPAVSSLLATSEKSK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1224 387 Coils Coil 258 278 - -
Mtr1g1224 387 Gene3D Cupin 1 175 - -
Mtr1g1224 387 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 370 - -
Mtr1g1224 387 SMART cupin_9 1 132 IPR003347 -
Mtr1g1224 387 Pfam C5HC2 zinc finger 211 263 IPR004198 -
Mtr1g1224 387 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 1 370 - -
Mtr1g1224 387 Pfam JmjC domain, hydroxylase 2 115 IPR003347 -
Mtr1g1224 387 ProSiteProfiles JmjC domain profile. 1 132 IPR003347 -
Mtr1g1224 387 SUPERFAMILY Clavaminate synthase-like 2 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1224 Mtr-Chr1 14514599 14516611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1224 2 146 C2H2 Transcription Factor Family AT5G04240 42.069 2.54e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr1g1224 JmjC 1.8e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1224 - - gmx:100809650 484.952