Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1223 ATGGTTGAAAAAAGTTCAATTACTCACAAATCGAGTAAATTTGATTTGGATGATCTAAATTGGACAAACATGATTCCAGAATGTCCAGTATACCATCCATCAGAACAAGAGTTTGAGCATCCTTTAGTTTATCTGCAGAAAATTGCTCCCGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTAGTGCCTCTAATCCTGCTGAGTTTGTCTTAATGAAAGAGAAAAAGGACTTCAAGTTTGAAACAATTGTACAGCCTCTTAGGCTTTCCAAATGGAATGAGAAGGATATAATAACCTTCTCTAAGAGAGGAAGAAAATTTACATATCAAGAATTTGAGGCTATAGCAAACAAGGCATTTTCCAACAGATTTTGCAGTTCAGAAGATCTTTCTTCGTTAGATATCGAAAAAGCGTTCTGGCATGAAATGATACATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAACATTGAGGGTAGTGTCTTTTCATGCGATCCTGATGATAAACTTGGAACAAGCAAATTCAATTTGAAGAATTTGGCGCGGCTGCCGCAGTCTCCGTTGCGTTTAGTTGACAGAGGAATTCCTGGAATAACTGATCCTATGCTTTACATTGGGATGCTATTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCACTCAGGTGGAAGTAAAACTTGGTACGGCGTGCCTAGCTCTGCAGCCTCTCAATTTGAAAAGACTGTCTTGAATCATGTGTATTGCAAAAAAATCTTAGCAGAACATGGAGAGAATGGTGCATTCCAATTTCTTGCACAAAAAACAACCATGTTCCCTCCTAATGTCTTGTTACAACATGATGTGCCGGTTTACAAGGCGGTGCAAAAGCCAGGAGAGTTTGTCATCACCTTTCCTAATTCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCATTTGGGGCTGCAGCAAGCAAACGTTATGCACATCTTAAAATTCTACCTATAATTCCATATGAGGAACTTGTTTGTAAAGAAGCAATGCTTATCTACAATTCCTCAAAAGACAGAAGTTACAAAAGCAAACTCGAAGTCATGGCATCTTATTGTGCCATTGAACAGTCTTTCTGGCATCTTATGCAATATTATAAGACATCACTATCGCGATTGAACAATTCAAGAAAGTCATCAAGCTCTTCAAATACATCAATAGGTTCTGTAACATGCAGCCTCTGCCATAGGGATTGTTACGTCGCTTACTTGTTGTGCAAGAAATGCTATTCACATCCAATTTGCCTTTTCCATGACGTTGTGCCAAAAACTTGCTTATGTGGGGGAAAATATACTGTTTTTAAGACGAATGACATGTCAGAACTCGAAGATGCTGCCAAAAGTTTTGAACAGAATGATAATCGGCATGAAGAAAAAAGTGCTAGAAGAACTGTTAACTCTGCAAGGGCAGTATCTTCTAAACTGAAAACAAGATTAACGGACAACGTCAAGCACAATGTTGAAAAGAATCAAAAGAAGACAAAGAATCGTCGTAGAAACAATGCTTCTCCATCGGTGATGAGTGCCAAAAGACCTCGAACCCTTTATAACTTGAGAAAACATGAATCAAAATTGATCATAGAAGCTCCTGCAATATCTTCTCGTTTTGAGATCTGA 1716 0.38 MVEKSSITHKSSKFDLDDLNWTNMIPECPVYHPSEQEFEHPLVYLQKIAPEASKYGICKIVSPISASNPAEFVLMKEKKDFKFETIVQPLRLSKWNEKDIITFSKRGRKFTYQEFEAIANKAFSNRFCSSEDLSSLDIEKAFWHEMIHGEKGTVEYGVNIEGSVFSCDPDDKLGTSKFNLKNLARLPQSPLRLVDRGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGGSKTWYGVPSSAASQFEKTVLNHVYCKKILAEHGENGAFQFLAQKTTMFPPNVLLQHDVPVYKAVQKPGEFVITFPNSYHAGFSHGFNCGEAVNFAIGDWFPFGAAASKRYAHLKILPIIPYEELVCKEAMLIYNSSKDRSYKSKLEVMASYCAIEQSFWHLMQYYKTSLSRLNNSRKSSSSSNTSIGSVTCSLCHRDCYVAYLLCKKCYSHPICLFHDVVPKTCLCGGKYTVFKTNDMSELEDAAKSFEQNDNRHEEKSARRTVNSARAVSSKLKTRLTDNVKHNVEKNQKKTKNRRRNNASPSVMSAKRPRTLYNLRKHESKLIIEAPAISSRFEI* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1223 571 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Mtr1g1223 571 Pfam JmjC domain, hydroxylase 205 328 IPR003347 -
Mtr1g1223 571 Gene3D Cupin 28 392 - -
Mtr1g1223 571 Coils Coil 472 492 - -
Mtr1g1223 571 ProSiteProfiles JmjC domain profile. 175 345 IPR003347 -
Mtr1g1223 571 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 484 559 - -
Mtr1g1223 571 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 8 486 - -
Mtr1g1223 571 MobiDBLite consensus disorder prediction 479 543 - -
Mtr1g1223 571 SMART JmjN_1 27 68 IPR003349 -
Mtr1g1223 571 MobiDBLite consensus disorder prediction 479 497 - -
Mtr1g1223 571 Pfam jmjN domain 29 61 IPR003349 -
Mtr1g1223 571 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 486 - -
Mtr1g1223 571 PANTHER LYSINE-SPECIFIC DEMETHYLASE 484 559 - -
Mtr1g1223 571 SUPERFAMILY Clavaminate synthase-like 179 361 - -
Mtr1g1223 571 SMART cupin_9 175 345 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1223 Mtr-Chr1 14497624 14500583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1223 25 483 JUMONJI Transcription Factor Family AT2G34880 31.499 3.38e-59 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr1g1223 JmjC 1.2e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1223 - - gmx:100809650 812.757