Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1215 ATGTATGTACAGATAACAGTGTTGATTGGAGAGACAGGTTCTGGGAAGAGTACTCAATTAGTGCAGTTTCTTGCTGATTCGGGCGTTGGGGCCAATGAGTCAATTGTGTGCACTCAGCCTCGCAGGATTGCTGCAAAATCATTGGCTGAAAGGGTCCGGGAAGAAAGTGGTGGATGTTATGAAGACAGTTCAATCAAGTGTTATTCTTCATTTTCATCTTGGAACAAGTTCGATTCCAGGATAATCTTCATGACAGATCATTGTTTATTGCAGCACTACATGAGTGATAAAAATTTGTCTGGGATTTCGTGTATTATAGTGGACGAGGCTCATGAAAGGAGTATAAATACTGATTTACTGTTGGCATTGATAAAGAATTTACTTTCTAAGAGGGTTGAAATGCGGCTTATCATCATGTCTGCCACAGCTGATGCAAAGCAGTTATCTGATTACTTCTATGGTTGTGGAATTTTTCGTGTGCCAGGGAGAAACTTCCCTGTGGAGGTGAGATATGTTCCATCTGAATATGAAGGACGATCTCGTTCTTCTGTTGTGGACCCTTATGTTTCCGATGTTGTTAAAATGGCAACTGAAATTCACAGAACAGAGAAAGAGAAAGAAGGAACTATTCTTGCCTTTCTTACATCACAGTTAGATGTAGAATGGGCTTGTGAAAAGTTTGAAGCCCCCTCTGCAGTAGCTTTGCCCTTGCATGGAAAACTTTCGTCTGAAGAGCAATTTCATATTTTCAAGAACTATCCTGGAAAAAGAAAAGTGATATTTTCAACGAATGTCGCAGAGACATCACTTACGATTCCTGGTGTTAAGTATGTGATAGATTCTGGATTGGTTAAAGATAGTCGTTTTGATCCTAGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGTTCTGCTAACCAACGGGCTGGTCATGCTGGGAGGACCGAGCCTGGTAGATGCTATAGACTGTACTCAGAAGCTGATTATCAGTCTATGGAACCAAATCAAGATCCCGAGATTCGAAGAGTTCATCTTGGCGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAGAATGTCCAGGATTTCGATTTTGTGGATGCTCCATCCACTAGCTCTATTGAGAGGGCAATCGGGAATCTAATTCAATTAGGAGCCATTAAACTCAACAATGATGTTTATGAATTAACTCCTGAAGGTAGGCGCTTAGCAAGAATGGAGATTGAACCCAGGCTTGGTAAACTCGTTCTTGGTTGTTTCCAATATACCTTGGGTAGGGAAGGCATTGCCCTAGCTGCCATGATGGCCAATGCTAGAAGCGTATTTTGCAGAGTTGGTAATGAAGATGATAAGCAAAAATCTGATTGTCAGAAAGTGCAATTTTGCCATTGCGAGGGTGACCTTTTTACTCTTCTCTCTGTGTACATGGAATGGGAAGTCCAGCCTCAAAATTGGAAGAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGATGCCAAAACACATTTTTGGAGTTAGAATCTTGCCTAGAGAGTGAACTTGGCCTTGTTGTTCCAAGTTACTGGCGCTGGGACCCTCATAACCCTTCTATTCACGATGAGAACATGAAAAAGGCTATACTGTCCTCACTTTCTGAAAATGTAGCCATGTACTCTGGACGCAATCAACTTGGTTACATAGTAGCTCAAACGGAGAAACATGTTCAACTACATCCATCTTGTTCCTTGCTTGTATTTTCCCAGAGGCCTAGTTGGGTGGTTTTTTATGAGCTTTGTTCAGAGTCTAATGAATATTTGTTCTGTGTGAGTGCTGTTGACTTTCAATCATTATACAGCCTTAAACCTCCTCCCTTGTTTGATGTATCCAAGATGGAAGAGCAGAAGTTGCAAACAAAGACGCTGGTTGGTTTTGGCAAACATGTTCTCAAGAGATTTTGTGGGAAAGGAAATTTGCTCGGTCATGTTTCTCGTATTAGGAAAGCTTGTATGGACGAAAGAATATTTGTTGACGTGAATTTTGACGAGAACCACATTCAGCTGTATGCCTGTTCCAATGATATGAATACAGCTAGTAAGCTGGTGAATGATGTTTTACAATATGAGAAGAAGAGGTTACACACTGAATGTATGGAAAAATGTTTGTATCATGGGTTTGGTTCCTCATCACCCGTGGCTATGTTTGGCTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAGCTTCCCTTGAGTGTTGATGTGTTTCACCCAAACGTAAATGCAATTGACGAAATGGAGCTCCTGATGTTTTTTGAGAAAAATACTTCTGGTTGTATGTGTGACATGCAAAAGTTCACAGGCATGGTGAAAGATGTTGAGGATAAAGCAAAATGGGGCAAGATAACATTTATGACCTCCAATGCTGCCAAAAGAGCTGCTGAGCTGGATGGAGAAGAGTTTTGTGGTTCGCCCCTAAAAATAGTTCATTCACAGTCAGCTATGGGAGGGGATACAACATTTTCATTTCCTGCAGTTGAAGCAAGAATTTCTTGGCTTCGTAGGCCTATCAAAGCAGTTGGCATAATCAAATGTGATAAAAATGATGTGGATTTCATCATTAGAGATTTTGAAAAACTTATCGTAGATGGAAGAAGGTATGTTCGTTGTGCTCCCAGTGATAAGTATTTGGACAACATTCTTATAACTGGGCTTGACAAAGAGGTTCCTGAGACTGAAATTTTGGATGTGCTAAGATCTGCTACTAGTAGAAGGATTCTAGATTTTTTCTTTAAGAGAGGAGATGCTGTTGAAAATCCACCATGCAGTGTGATTGCAGAGACAATATTAAAAGAAATCTCCCCCTTAATGCCCAAAAAAAAACCTCACATTAGTTCTTGCCGTGTTCAGGTGTTTCCACCTAAGCCGAAGGATTATTCGATGAATGCTTTAATTCATTTTGATGGAAGATTACATTTAGAAGCAGCAAAAGCTTTGGAGAAAATTGATGGAAAGGTGTTGCCCGGATTTCATTCTTGGCAGAAGATAAAGACCCAGCGTTTGTTTCACAGCACCTTGATATTTTCTCCTCCAGTGTATCATGTGATTAAGGGACAACTGGAAAAAGTGCTGGCACGTTTCAACAATTTAGAAGGTCTTGAGTGGAAACTAGACATAACTCCTAATGGCTCCCACCGAGTGAAAATAACAGCCAATGCCACAAAGACGGTGGCAGAAGGTAGGAGACTTCTGGAAGAACTGTGGAGAGGGAAAGTCATTGTCCACGACAACCTCACCCCTGCCACTCTACAGCCCATATTGTCCAAAGATGGTTCTAGTCTTACAAGCTCAATACAGAAAGCGACTTCAACTTACATTCAATTTGATAGGCGCAACATGAAGTTACGGATATTTGGTTCGCCGGACAAGATTGCTTTGGCTGAGAAAAAGTTAATTCAATCTCTCTTGTCCCTCCATGACGAAAAACAGTCAGTAATCCGTCTGAGTGGAAGGGACCTACCTTCTGATTTTATGAAGCAAGTGGTTAAGAATTTCGGGCCAGATCTTCATGGACTAAAAGAGAAGGTACCCGGGGCAGATCTTAGGCTTAACACACGCAACCGGACAATCCTTTGTCATGGTAACTCGGAGTTGAAATCAAGAGTGGAGGAAATAACTTTTGAGATTGCACGTTTAAGCAATCCTTCAAGCGAGAGATTTGACACTGGACCTAGTTGCCCAATTTGCTTGTGTGAGGTTGAGGATGGATATCAGCTTGAAGGTTGTGGTCATTTGTTCTGCCGGTCATGTATGGTGGAGCAGTGTGAATCTGCTATAAAAAACCAAGGCAGTTTCCCAATACGTTGTGCTCATCAGGGCTGTGGAAATCATATTTTGCTTGTAGATTTCAGAACTCTCCTGTCAAATGATAAGTTGGAAGAACTTTTCAGGGCTTCTTTGGGAGCTTTTGTAGCCTCAAGTTCAGGAACCTATAGGTTTTGTCCATCTCCTGACTGCCCCTCAATCTATAGAGTTGCAGATCCCGACACAGCTAGTGTTCCATTTGTTTGTGGGGCATGTTATTCAGAGACTTGTACCAGGTGCCACATAGAGTATCATCCGTACGTTTCATGTGAGAGATACCGACAATTCAAGGATGACCCGGATTCATCTCTGAGGGATTGGTGCAAAGGGAAAGAACAAGTTAAGAATTGCCCGGCATGTGGGCATGTAATTGAGAAGGTAGATGGGTGCAATCACATTGAGTGCAAATGTGGAAAACATATCTGCTGGGTTTGCTTAGAGTTCTTTACAACCAGTGGTGAATGTTATAGCCATATGGATACTATACACTTGGGCGTAGATTAA 4365 0.416 MYVQITVLIGETGSGKSTQLVQFLADSGVGANESIVCTQPRRIAAKSLAERVREESGGCYEDSSIKCYSSFSSWNKFDSRIIFMTDHCLLQHYMSDKNLSGISCIIVDEAHERSINTDLLLALIKNLLSKRVEMRLIIMSATADAKQLSDYFYGCGIFRVPGRNFPVEVRYVPSEYEGRSRSSVVDPYVSDVVKMATEIHRTEKEKEGTILAFLTSQLDVEWACEKFEAPSAVALPLHGKLSSEEQFHIFKNYPGKRKVIFSTNVAETSLTIPGVKYVIDSGLVKDSRFDPSSGMNVLKVCWISQSSANQRAGHAGRTEPGRCYRLYSEADYQSMEPNQDPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSTSSIERAIGNLIQLGAIKLNNDVYELTPEGRRLARMEIEPRLGKLVLGCFQYTLGREGIALAAMMANARSVFCRVGNEDDKQKSDCQKVQFCHCEGDLFTLLSVYMEWEVQPQNWKNKWCWENSINAKSMRRCQNTFLELESCLESELGLVVPSYWRWDPHNPSIHDENMKKAILSSLSENVAMYSGRNQLGYIVAQTEKHVQLHPSCSLLVFSQRPSWVVFYELCSESNEYLFCVSAVDFQSLYSLKPPPLFDVSKMEEQKLQTKTLVGFGKHVLKRFCGKGNLLGHVSRIRKACMDERIFVDVNFDENHIQLYACSNDMNTASKLVNDVLQYEKKRLHTECMEKCLYHGFGSSSPVAMFGSGAEIKHLELEKLPLSVDVFHPNVNAIDEMELLMFFEKNTSGCMCDMQKFTGMVKDVEDKAKWGKITFMTSNAAKRAAELDGEEFCGSPLKIVHSQSAMGGDTTFSFPAVEARISWLRRPIKAVGIIKCDKNDVDFIIRDFEKLIVDGRRYVRCAPSDKYLDNILITGLDKEVPETEILDVLRSATSRRILDFFFKRGDAVENPPCSVIAETILKEISPLMPKKKPHISSCRVQVFPPKPKDYSMNALIHFDGRLHLEAAKALEKIDGKVLPGFHSWQKIKTQRLFHSTLIFSPPVYHVIKGQLEKVLARFNNLEGLEWKLDITPNGSHRVKITANATKTVAEGRRLLEELWRGKVIVHDNLTPATLQPILSKDGSSLTSSIQKATSTYIQFDRRNMKLRIFGSPDKIALAEKKLIQSLLSLHDEKQSVIRLSGRDLPSDFMKQVVKNFGPDLHGLKEKVPGADLRLNTRNRTILCHGNSELKSRVEEITFEIARLSNPSSERFDTGPSCPICLCEVEDGYQLEGCGHLFCRSCMVEQCESAIKNQGSFPIRCAHQGCGNHILLVDFRTLLSNDKLEELFRASLGAFVASSSGTYRFCPSPDCPSIYRVADPDTASVPFVCGACYSETCTRCHIEYHPYVSCERYRQFKDDPDSSLRDWCKGKEQVKNCPACGHVIEKVDGCNHIECKCGKHICWVCLEFFTTSGECYSHMDTIHLGVD* 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1215 1454 ProSiteProfiles Zinc finger RING-type profile. 1245 1288 IPR001841 -
Mtr1g1215 1454 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 191 359 IPR001650 -
Mtr1g1215 1454 CDD SF2_C_RHA 165 327 - -
Mtr1g1215 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1242 1321 IPR013083 -
Mtr1g1215 1454 SMART ultradead3 1 170 IPR014001 -
Mtr1g1215 1454 Gene3D - 164 338 IPR027417 -
Mtr1g1215 1454 SUPERFAMILY RING/U-box 1327 1382 - -
Mtr1g1215 1454 ProSitePatterns Zinc finger RING-type signature. 1261 1270 IPR017907 -
Mtr1g1215 1454 Pfam DEAD/DEAH box helicase 8 148 IPR011545 GO:0003676|GO:0005524
Mtr1g1215 1454 Pfam IBR domain, a half RING-finger domain 1321 1377 IPR002867 -
Mtr1g1215 1454 Gene3D - 1355 1450 - -
Mtr1g1215 1454 SMART ha2_5 379 475 IPR007502 GO:0004386
Mtr1g1215 1454 PANTHER ATP-DEPENDENT RNA HELICASE 4 1206 - -
Mtr1g1215 1454 PANTHER ATP-DEPENDENT RNA HELICASE 1277 1369 - -
Mtr1g1215 1454 SUPERFAMILY RING/U-box 1244 1321 - -
Mtr1g1215 1454 CDD DEXHc_RHA-like 4 160 - -
Mtr1g1215 1454 Pfam Helicase conserved C-terminal domain 199 318 IPR001650 -
Mtr1g1215 1454 Gene3D - 2 163 IPR027417 -
Mtr1g1215 1454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 497 IPR027417 -
Mtr1g1215 1454 SMART helicmild6 221 319 IPR001650 -
Mtr1g1215 1454 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 161 IPR014001 -
Mtr1g1215 1454 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 544 620 IPR011709 -
Mtr1g1215 1454 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1277 1369 - -
Mtr1g1215 1454 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 4 1206 - -
Mtr1g1215 1454 ProSiteProfiles TRIAD supradomain profile. 1241 1454 IPR044066 -
Mtr1g1215 1454 SMART ibrneu5 1378 1442 IPR002867 -
Mtr1g1215 1454 SMART ibrneu5 1312 1377 IPR002867 -
Mtr1g1215 1454 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 103 112 IPR002464 -
Mtr1g1215 1454 ProSitePatterns Zinc finger C2H2 type domain signature. 1429 1450 IPR013087 -
Mtr1g1215 1454 SUPERFAMILY RING/U-box 1399 1447 - -
Mtr1g1215 1454 Pfam Helicase associated domain (HA2) 380 474 IPR007502 GO:0004386
Mtr1g1215 1454 Gene3D - 363 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1215 Mtr-Chr1 14375121 14395102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1215 1261 1442 C3H Transcription Factor Family AT2G31770 28.272 7.91e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1215 K12818 - gmx:100810008 2175.59