Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1209 ATGAAAATCCCTTGTTGTTCGGTGTGCCAAACGCGGTACAACGAAGAAGAACGAGTTCCTCTTCTTCTTCAATGCGGTCATGGCTTCTGCAAAGAGTGTCTTTCTAGAATGTTCTCATCTTCCTCCGACGCTAATCTCACATGTCCTCGTTGCCGCCACGTGTCCACCGTCGGTAACTCAGTTCAAGCTCTCCGCAAAAACTACGCCGTTCTTTCGTTAATCCTCTCCGCCGCCGATTCCGCCGCCGCTGCCGGAGGTGGTGGCGGCGGTGATTGTGATTTCACCGATGATGATGAAGACCGAGATGACAGCGAGGTTGACGACGGTGACGATCAGAAACTAGATTGCCGCAAGAACAGCCGCGGATCGCAGGCGTCGAGTTCGGGAGGATGTGCGCCGGTGATTGAGGTTGGAGTGCATCAGGATTTGAAATTGGTGAGGAGGATTGGGGAAGGGAGGAGAGCTGGAGTGGAGATGTGGTCGGCGGTGATTGGAGGTGGAAGGTGTAAGCATCAAGTGGCGGTGAAAAAGGTGGTATTGAATGAGGGAATGGATTTGGATTGGATGTTAGGGAAGTTGGAGGATTTGCGTAGGACTTCAATGTAGTGTAGGAATGTTTGTACTTTTCATGGTGCTATGAAGGTTGATGAGGGTTTGTGTCTTGTGATGGATAAGTGTTTTGGATCGGTTCAATCGGAGATGCTAAGGAATGAAGGAAGACTCACTTTGGAACAAGTCTTGAGATATGGGGCAGACATTGCACGAGGGGTTGGTGAACTTCATGCTGCAGGCGTTGTTTGCATGAGTTTAAAGCCTTCCAATCTACTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTAGACCTGAGTGCGACTCCGCAAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTACACAGCACCAGAGGCCTGGGAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGGAATAGGTATATCTCCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTCGAGATGTGCACGGGTGCCATTCCTTGGGCTGGTTTAAGTGCAGAAGAAATCTATCGACAAGTTGTCAAGGCAAAGAAACAGCCTCCACAATATGCTAGTGTGGTTGGTGGTGGAATTCCAAGGGAATTGTGGAAGATGATTGGAGAATGCTTACAATTCAAACCATCTAAAAGACCTACCTTCAATGCAATGCTGGCAATATTTCTCCGTCATTTGCAAGAAATACCACGCAGTCCTCCTGCAAGCCCTGATAATGACCTTGTTAAGGGCTCTGTATCAAATGTAACAGAGGCTTCCCCAGTACCTGAATTAGAAATTCCTCAGGACCCAAATCGTCTCCATCGACTTGTGTCTGAAGGGGATGTCACTGGCGTTAGAGACTTTCTGGCCAAGGCTGCATCCGAAAATGAAAGCAACTTCATATCTTCTCTATTGGAAGCTCAAAATGCTGATGGGCAAACAGCTCTCCACTTGGCTTGTAGACGTGGCAGTGCAGAACTGGTCGAGACAATTCTGGATTATCCAGAGGCAAATGTTGATGTCTTGGACAAAGACGGGGATCCTCCTCTTGTTTTTGCTTTAGCAGCTGGGTCCCATGAATGTGGATGTAGCCTTATCAAAAGAAATGCTAATGTGACATCACGATTAAGAGATGGCTTGGGCCCATCAGTAGCTCACGTTTGTGCCTATCATGGTCAGCCAGATTGTATGCGAGAGTTACTTTTAGCTGGAGCTGATCCCAATGCAGTGGATGACGAAGGTGAATCTGTACTTCATAGGGCAATTGCCAAGAAGTTCACAGACTGTGCTCTTGTGATAGTGAATGGAGGCTGTAGATCAATGGCCATCTCGAATTCAAAAAATTTGACACCGCTGCACTTGTGTGTAGTAACATGGAATGTTTCTGTTGTGAAGAGATGGGTGGAAGTTGCAACTGCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTATTGGCACTGCCTTGTGCATGGCAGCCGCTTCTAAGAAAGACCATGAAAGTGAGGGGAGAGACTTGGTGCAGATATTGCTTACAGCAGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACAAATGATGTGGACTTGGTTCAGGTTATTCTTGCTGCTGGTGTTGATGTGAACATTCGAAATGTGCACAATAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGACATGTGTTGGGCTGCTTCTAGATGCTGGGGCGGATTGTAATTTGCAGGATGATGATGGTGATAATGCTTTCCATATAGCAGCTGAAACAGCAAAAATGATACGTGAAAATCTGGACTGGCTTGTTGTGATGCTATTGAATCCTGATGCTGATATTGAAGTCAGAAACCACAGAGGCAAGACACTACGAGACATCTTAGAAGGTCTACCCCGAGAGTGGTTATCCGAAGATTTGATGGAGGCACTCGTGAATAGAGGAGTTCATTTATCTCCTATAACATTTGACGTATTAGATTGGGTGAAGTTTAAAAGAACAGTCACAGAACCAAAACATGGGTGGCAAGGTGCTAAACCAAATAGTGTTGGCTTTGTGCAAAGTGTGCCAGGCAGAGATAATGATGATCTCATTGTTTCATTTTGTTCGGGCGAGGTTCGTGTGCTGACAAGTGAAATTGTAAAACTCATACCGTTGGATAGGGGACAGCATGTACAACTGAAAGGAGATGTAAACGAACCTAGGTTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACAGTATTATGTGTTGACCCAGAGGATGGAATCCTCCGTGTTGGATTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGGGTTGAGGAGTTCAAGGTTGGAGATTGGGTTCGTGTTCGTCCAACCCTTACAACTTCAAAGCATGGATTAGGAAATGTGGTACCGGGAACCATTGGCATTGTATATTGTATCCGACCTGACAGTAGTTTGTTAGTCGAGTTGAGCTATGTTCAAAATCCATGGCATTGTGAACCAGAGGAGATTGAGCATGTTCCTCCTTTTAGGATTGGTGATAGGGTATGTGTGAAGCGATCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCACAGTGTTGGAAGAATAAGTGAGATTGAGAATGATGGTCTCTTAATAATAGAAATACCAAATCGACCCATACCATGGCAAGCTGATCCATCTGATATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTGAAAGCTTCAGTATCTTCTCCAAAATATGGATGGGAGGATATTACAAGGAACAGTATTGGTGTAATTCATAGCTTGTAAGAGGATGGCGATATGGGTGTTGCCTTTTGCTTCAGAAGTAAGCCTTTTTCGTGCTCGGTCACTGATGTGGAGAAAGTTCCTCCTTTTGAGGTGGGACAAGAAATTCGTGTGATGCAATCCGTTAATCAGCCACGGCTTGGGTGGTCAAATGAATCAGCAGCAACTGTTGGAAAAATAGTGCGAATTGACATGGATGGTGCCCTCAATGCGAGGGTCACTGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAACGACTTCCAGGATTTGAGGTTGGAGATTGGGTACGCTCTAAACCAAGCCTGGGAAATAGACCAAGTTATGACTGGAATAGTGTTGGGAGAGAGAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATATTTGGAGTTGGCTTGCTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCCTAGCTTTAAAGTCGGGCAGTATGTTAGGTTCCGACCTGGTTTGGCTGAACCCAGGTTTGGTTGGGGCGGGGCTCAGCCTGAATCTCAAGGTATTATAACCAGTATTCATGCGGATGGAGAAGTCAGGGTTGCATTCTTTGGTTTGTCGGGACTGTGGAAAGGCGATCCTTCAGATCAGGCAGAACAAATCTTTGAAGTGGGAGAGTGGGTGAGGCTGAAAGAAAACGTAAATAATTGGAAATCAATTGGCCCAGGTAGTGTCGGTGTCGTTCAAGGAATAGGTTATGAAGGAGGTGAAACTGACAGAAGCACGTTTGTTGGCTTTTGTGGGGAACAAGAAAAATGGGTGGGACCAAGTTCCCATCTTGAAAGAGTTGACAAACTCATTGTGGGACAGAAGGTTAGAGTTAAACAAAATGTAAAACAACCTAGGTTTGGGTGGTCAGGGCACACCCATGCTAGTATTGGTACTATACAAGCAATTGATGCTGATGGAAAACTTCGGATATACACTCCAGCGGGTTCAAGAACATGGATGTTAGACCCATCAGAAGTGGAGGTGGTAGAAGAGAAGGAGCTATGTATTGGAGACTGGGTAAGGGTTAGAGCATCAGTTTCCACTCCAACCCACCATTGGGGGGAAGTGAGTCATTCAAGCATCGGGGTGGTGCATCGGGTGGAAGATGATAATTTATGGGTGTCATTCTGTTTTGTGGAGAGATTATGGCTTTGTAAGGCAAGTGAAATGGAACGGGTTAGACCGTATAAAGTGGGGGACAAAGTAAGGATCAGAGATGGACTTGTATCACCACGGTGGGGATGGGGGATGGAGACGCACGCCAGCAGGGGGCATGTTGTAGGAGTAGATGCAAATGGTAAACTAAGAATAAGATTTCGATGGAGGGAAGGGAGACCTTGGATAGGAGACCCTGCTGATATTGCTCTTGATGAGAACTGA 4881 0.461 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCKECLSRMFSSSSDANLTCPRCRHVSTVGNSVQALRKNYAVLSLILSAADSAAAAGGGGGGDCDFTDDDEDRDDSEVDDGDDQKLDCRKNSRGSQASSSGGCAPVIEVGVHQDLKLVRRIGEGRRAGVEMWSAVIGGGRCKHQVAVKKVVLNEGMDLDWMLGKLEDLRRTSM*CRNVCTFHGAMKVDEGLCLVMDKCFGSVQSEMLRNEGRLTLEQVLRYGADIARGVGELHAAGVVCMSLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSAKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISPESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRQVVKAKKQPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFNAMLAIFLRHLQEIPRSPPASPDNDLVKGSVSNVTEASPVPELEIPQDPNRLHRLVSEGDVTGVRDFLAKAASENESNFISSLLEAQNADGQTALHLACRRGSAELVETILDYPEANVDVLDKDGDPPLVFALAAGSHECGCSLIKRNANVTSRLRDGLGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKFTDCALVIVNGGCRSMAISNSKNLTPLHLCVVTWNVSVVKRWVEVATADEIAEAIDIPSPIGTALCMAAASKKDHESEGRDLVQILLTAGADPSAQDSQNGRTALHTAAMTNDVDLVQVILAAGVDVNIRNVHNSIPLHLALARGAKTCVGLLLDAGADCNLQDDDGDNAFHIAAETAKMIRENLDWLVVMLLNPDADIEVRNHRGKTLRDILEGLPREWLSEDLMEALVNRGVHLSPITFDVLDWVKFKRTVTEPKHGWQGAKPNSVGFVQSVPGRDNDDLIVSFCSGEVRVLTSEIVKLIPLDRGQHVQLKGDVNEPRFGWRGQSRDSIGTVLCVDPEDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRVRPTLTTSKHGLGNVVPGTIGIVYCIRPDSSLLVELSYVQNPWHCEPEEIEHVPPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHSL*EDGDMGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIRVMQSVNQPRLGWSNESAATVGKIVRIDMDGALNARVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGNRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSFKVGQYVRFRPGLAEPRFGWGGAQPESQGIITSIHADGEVRVAFFGLSGLWKGDPSDQAEQIFEVGEWVRLKENVNNWKSIGPGSVGVVQGIGYEGGETDRSTFVGFCGEQEKWVGPSSHLERVDKLIVGQKVRVKQNVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSRTWMLDPSEVEVVEEKELCIGDWVRVRASVSTPTHHWGEVSHSSIGVVHRVEDDNLWVSFCFVERLWLCKASEMERVRPYKVGDKVRIRDGLVSPRWGWGMETHASRGHVVGVDANGKLRIRFRWREGRPWIGDPADIALDEN* 1627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1209 1624 CDD RING-HC_ScPSH1_like 5 52 - -
Mtr1g1209 1624 ProSiteProfiles Ankyrin repeat profile. 725 757 IPR002110 GO:0005515
Mtr1g1209 1624 ProSiteProfiles Ankyrin repeat profile. 511 544 IPR002110 GO:0005515
Mtr1g1209 1624 PRINTS Ankyrin repeat signature 707 721 IPR002110 GO:0005515
Mtr1g1209 1624 PRINTS Ankyrin repeat signature 512 527 IPR002110 GO:0005515
Mtr1g1209 1624 Gene3D Transferase(Phosphotransferase) domain 1 139 444 - -
Mtr1g1209 1624 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1623 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Mtr1g1209 1624 ProSiteProfiles Ankyrin repeat profile. 758 790 IPR002110 GO:0005515
Mtr1g1209 1624 ProSiteProfiles Protein kinase domain profile. 143 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1209 1624 SMART ANK_2a 647 678 IPR002110 GO:0005515
Mtr1g1209 1624 SMART ANK_2a 580 609 IPR002110 GO:0005515
Mtr1g1209 1624 SMART ANK_2a 545 574 IPR002110 GO:0005515
Mtr1g1209 1624 SMART ANK_2a 468 497 IPR002110 GO:0005515
Mtr1g1209 1624 SMART ANK_2a 791 826 IPR002110 GO:0005515
Mtr1g1209 1624 SMART ANK_2a 511 541 IPR002110 GO:0005515
Mtr1g1209 1624 SMART ANK_2a 758 787 IPR002110 GO:0005515
Mtr1g1209 1624 SMART ANK_2a 685 720 IPR002110 GO:0005515
Mtr1g1209 1624 SMART ANK_2a 725 754 IPR002110 GO:0005515
Mtr1g1209 1624 SMART ANK_2a 613 643 IPR002110 GO:0005515
Mtr1g1209 1624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Mtr1g1209 1624 SMART ring_2 6 51 IPR001841 -
Mtr1g1209 1624 ProSiteProfiles Ankyrin repeat region circular profile. 758 790 - -
Mtr1g1209 1624 Gene3D - 466 581 IPR036770 -
Mtr1g1209 1624 ProSiteProfiles Ankyrin repeat region circular profile. 725 756 - -
Mtr1g1209 1624 Pfam Ankyrin repeats (many copies) 583 630 IPR002110 GO:0005515
Mtr1g1209 1624 Pfam Mind bomb SH3 repeat domain 920 987 IPR040847 -
Mtr1g1209 1624 Pfam Mind bomb SH3 repeat domain 1370 1491 IPR040847 -
Mtr1g1209 1624 Pfam Mind bomb SH3 repeat domain 1554 1618 IPR040847 -
Mtr1g1209 1624 Pfam Mind bomb SH3 repeat domain 1244 1364 IPR040847 -
Mtr1g1209 1624 Pfam Mind bomb SH3 repeat domain 1119 1236 IPR040847 -
Mtr1g1209 1624 Pfam Mind bomb SH3 repeat domain 993 1113 IPR040847 -
Mtr1g1209 1624 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Mtr1g1209 1624 Pfam Ankyrin repeats (3 copies) 701 789 IPR002110 GO:0005515
Mtr1g1209 1624 Pfam Ankyrin repeats (3 copies) 490 574 IPR002110 GO:0005515
Mtr1g1209 1624 Pfam Protein kinase domain 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g1209 1624 ProSiteProfiles Ankyrin repeat profile. 791 829 IPR002110 GO:0005515
Mtr1g1209 1624 MobiDBLite consensus disorder prediction 84 129 - -
Mtr1g1209 1624 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Mtr1g1209 1624 SUPERFAMILY RING/U-box 5 58 - -
Mtr1g1209 1624 SUPERFAMILY Protein kinase-like (PK-like) 140 445 IPR011009 -
Mtr1g1209 1624 Pfam RING-type zinc-finger 6 49 IPR027370 -
Mtr1g1209 1624 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1623 - -
Mtr1g1209 1624 Gene3D - 724 854 IPR036770 -
Mtr1g1209 1624 MobiDBLite consensus disorder prediction 92 109 - -
Mtr1g1209 1624 SUPERFAMILY Ankyrin repeat 504 833 IPR036770 -
Mtr1g1209 1624 MobiDBLite consensus disorder prediction 437 469 - -
Mtr1g1209 1624 ProSiteProfiles Ankyrin repeat profile. 580 612 IPR002110 GO:0005515
Mtr1g1209 1624 ProSiteProfiles Ankyrin repeat region circular profile. 511 533 - -
Mtr1g1209 1624 Gene3D - 582 723 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1209 Mtr-Chr1 14324716 14338631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1209 172 425 MAP Kinase Kinase Kinase AT4G18950 27.757 4.64e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Mtr1g1209 Pkinase 8.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1209 K16279 - gmx:100777576 2892.83