Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1208 ATGGAAGAATCAATCCAAAGCGATGAAATCCCAAAATTCAGAGATATTAGACGCTATTACTGCCAATTCTGCGGCATCTGTAGATCCAAAAAAAACCTAATTACCTCACACATCAATTCCGAACATAAGGAGGAGATGGAGAAAGCAAGAGTTGAAACTGAACCTGAATCATTAGAGGGTGGTTTGAAAGCTAATACTTGTGAGGAATGTGGTGCTAGTTTTAAAAAACATGCTTATTTGCTGCAGCATATGCAAAGCCATTCCCTTGAGAGGCCATTTGTATGTAGCCTTGAAAATTGTAAGGCGAGCTACAGAAGAAAGGATCATCTGAATCGTCACCTTCTACAACATCAAGGGAAAACTTTTAAATGTCCTATTGAGAATTGCAAAAGTGGCTTCTCATTGCAAAGCAATTTGAAAAGACATGTTGAAGAGATGCATGATGAGAATTCTACCCCTCCTTGTAGTGGTGAAAATCAGAAGCAGTTTGTATGTCCTGAAATTGGCTGTGGTAAGGTTTTCAGATATGCATCACAACTACAGAAGCATGAAGATTCTCATGTTAGGCTTGAAACAATTGAAGTGGTGTGCTTAGAGCCCGGTTGCATGAAATTTTTCACCAATTCCGAGTGCCTTAAAGCTCATGTTAAATCCTGCCATCAATATGTGACCTGTGACACTTGTGGGACTAAGCAACTGAAGAAGAACATGAAGAGGCATCTCCGCACACACGAAGCCAGCAATTCATCCGAAGCATTTAAATGTGAATTTGAGGGTTGTGACAGCACGTTCTCAACTAAATCTAATCTTCATAAGCATGAGAAGGCTGTACACTTTCAAGTAAAGCCGTTTGTGTGTGGATTTCCTAATTGTGGAATGAGATTTGCTTACAAACACGTGAGAGATAATCATGAAAAGACTGCAAAACATGCTTTTGCCCTTGGTGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCAAGGGGAGGGGCGAAGAGAAAATGTCCTCCCACAGTAGAAATGTTGGTTAGGAAGAGAGTTGCCCCACCTAGTCAATTAGAGAACTTGCTATTTGTGCAGGATTGTCAGTAA 1095 0.4046 MEESIQSDEIPKFRDIRRYYCQFCGICRSKKNLITSHINSEHKEEMEKARVETEPESLEGGLKANTCEECGASFKKHAYLLQHMQSHSLERPFVCSLENCKASYRRKDHLNRHLLQHQGKTFKCPIENCKSGFSLQSNLKRHVEEMHDENSTPPCSGENQKQFVCPEIGCGKVFRYASQLQKHEDSHVRLETIEVVCLEPGCMKFFTNSECLKAHVKSCHQYVTCDTCGTKQLKKNMKRHLRTHEASNSSEAFKCEFEGCDSTFSTKSNLHKHEKAVHFQVKPFVCGFPNCGMRFAYKHVRDNHEKTAKHAFALGDFEEADEEFRSRPRGGAKRKCPPTVEMLVRKRVAPPSQLENLLFVQDCQ* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1208 364 PANTHER ZINC FINGER PROTEIN 423 HOMOLOG 10 355 - -
Mtr1g1208 364 ProSitePatterns Zinc finger C2H2 type domain signature. 286 310 IPR013087 -
Mtr1g1208 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 152 IPR013087 -
Mtr1g1208 364 ProSitePatterns Zinc finger C2H2 type domain signature. 124 147 IPR013087 -
Mtr1g1208 364 Gene3D Classic Zinc Finger 247 315 - -
Mtr1g1208 364 PANTHER ZINC FINGER PROTEIN 10 355 - -
Mtr1g1208 364 Pfam Zinc finger, C2H2 type 66 87 IPR013087 -
Mtr1g1208 364 Pfam Zinc finger, C2H2 type 253 278 IPR013087 -
Mtr1g1208 364 Pfam Zinc finger, C2H2 type 93 117 IPR013087 -
Mtr1g1208 364 Pfam Zinc finger, C2H2 type 163 187 IPR013087 -
Mtr1g1208 364 ProSitePatterns Zinc finger C2H2 type domain signature. 95 117 IPR013087 -
Mtr1g1208 364 SMART c2h2final6 93 117 IPR013087 -
Mtr1g1208 364 SMART c2h2final6 163 187 IPR013087 -
Mtr1g1208 364 SMART c2h2final6 65 87 IPR013087 -
Mtr1g1208 364 SMART c2h2final6 223 244 IPR013087 -
Mtr1g1208 364 SMART c2h2final6 195 220 IPR013087 -
Mtr1g1208 364 SMART c2h2final6 253 278 IPR013087 -
Mtr1g1208 364 SMART c2h2final6 19 42 IPR013087 -
Mtr1g1208 364 SMART c2h2final6 284 310 IPR013087 -
Mtr1g1208 364 SMART c2h2final6 122 147 IPR013087 -
Mtr1g1208 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 283 IPR013087 -
Mtr1g1208 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 122 IPR013087 -
Mtr1g1208 364 Gene3D Classic Zinc Finger 8 92 - -
Mtr1g1208 364 ProSitePatterns Zinc finger C2H2 type domain signature. 255 278 IPR013087 -
Mtr1g1208 364 Gene3D Classic Zinc Finger 158 223 - -
Mtr1g1208 364 ProSitePatterns Zinc finger C2H2 type domain signature. 197 220 IPR013087 -
Mtr1g1208 364 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Mtr1g1208 364 SUPERFAMILY beta-beta-alpha zinc fingers 64 117 IPR036236 -
Mtr1g1208 364 SUPERFAMILY beta-beta-alpha zinc fingers 159 189 IPR036236 -
Mtr1g1208 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Mtr1g1208 364 ProSitePatterns Zinc finger C2H2 type domain signature. 165 187 IPR013087 -
Mtr1g1208 364 Gene3D Classic Zinc Finger 93 117 - -
Mtr1g1208 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 192 IPR013087 -
Mtr1g1208 364 Gene3D Classic Zinc Finger 118 157 - -
Mtr1g1208 364 SUPERFAMILY beta-beta-alpha zinc fingers 234 292 IPR036236 -
Mtr1g1208 364 SUPERFAMILY beta-beta-alpha zinc fingers 103 156 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1208 Mtr-Chr1 14310546 14319807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1208 89 313 C2H2 Transcription Factor Family AT1G72050 51.449 4.59e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g1208 zf-C2H2 0.0056 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1208 K09191 - gmx:100801812 588.571