Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1207 ATGCCTCGGTCACGCTCAATTCAAAACGAGAGGCCATTTGTATGTAGCCTTGAAAATTGTAAGGCGAGCTACAGAAGAAAGGATCATCTGAATCGTCACCTTCTACAACATCAAGGGAAAACTTTTAAATGTCCTATTGAGAATTGCAAAAGTGGCTTCTCATTGCAAAGCAATTTGAAAAGACATGTTGAAGAGATGCATGATGAGAATTCTACCCCTCCTTGTAGTGGTGAAAATCAGAAGCAGTTTGTATGTCCTGAAATTGGCTGTGGTAAGGTTTTCAGATATGCATCACAACTACAGAAGCATGAAGATTCTCATGTTAGGCTTGAAACAATTGAAGTGGTGTGCTTAGAGCCCGGTTGCATGAAATTTTTCACCAATTCCGAGTGCCTTAAAGCTCATGTTAAATCCTGCCATCAATATGTGACCTGTGACACTTGTGGGACTAAGCAACTGAAGAAGAACATGAAGAGGCATCTCCGCACACACGAAGCCAGCAATTCATCCGAAGCATTTAAATGTGAATTTGAGGGTTGTGACAGCACGTTCTCAACTAAATCTAATCTTCATAAGCATGAGAAGGCTGTACACTTTCAAGTAAAGCCGTTTGTGTGTGGATTTCCTAATTGTGGAATGAGATTTGCTTACAAACACGTGAGAGATAATCATGAAAAGACTGCAAAACATGCTTTTGCCCTTGGTGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCAAGGGGAGGGGCGAAGAGAAAATGTCCTCCCACAGTAGAAATGTTGGTTAGGAAGAGAGTTGCCCCACCTAGTCAATTAGAGAACTTGCTATTTGTGCAGGATTGTCGGTAA 855 0.414 MPRSRSIQNERPFVCSLENCKASYRRKDHLNRHLLQHQGKTFKCPIENCKSGFSLQSNLKRHVEEMHDENSTPPCSGENQKQFVCPEIGCGKVFRYASQLQKHEDSHVRLETIEVVCLEPGCMKFFTNSECLKAHVKSCHQYVTCDTCGTKQLKKNMKRHLRTHEASNSSEAFKCEFEGCDSTFSTKSNLHKHEKAVHFQVKPFVCGFPNCGMRFAYKHVRDNHEKTAKHAFALGDFEEADEEFRSRPRGGAKRKCPPTVEMLVRKRVAPPSQLENLLFVQDCR* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1207 284 SUPERFAMILY beta-beta-alpha zinc fingers 40 68 IPR036236 -
Mtr1g1207 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 203 IPR013087 -
Mtr1g1207 284 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Mtr1g1207 284 ProSitePatterns Zinc finger C2H2 type domain signature. 175 198 IPR013087 -
Mtr1g1207 284 SUPERFAMILY beta-beta-alpha zinc fingers 154 212 IPR036236 -
Mtr1g1207 284 ProSitePatterns Zinc finger C2H2 type domain signature. 206 230 IPR013087 -
Mtr1g1207 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 112 IPR013087 -
Mtr1g1207 284 Gene3D Classic Zinc Finger 74 142 - -
Mtr1g1207 284 ProSitePatterns Zinc finger C2H2 type domain signature. 85 107 IPR013087 -
Mtr1g1207 284 ProSitePatterns Zinc finger C2H2 type domain signature. 117 140 IPR013087 -
Mtr1g1207 284 PANTHER ZINC FINGER PROTEIN 423 HOMOLOG 4 275 - -
Mtr1g1207 284 Gene3D Classic Zinc Finger 38 73 - -
Mtr1g1207 284 Gene3D Classic Zinc Finger 3 37 - -
Mtr1g1207 284 SUPERFAMILY beta-beta-alpha zinc fingers 8 39 IPR036236 -
Mtr1g1207 284 Gene3D Classic Zinc Finger 168 236 - -
Mtr1g1207 284 PANTHER ZINC FINGER PROTEIN 4 275 - -
Mtr1g1207 284 ProSitePatterns Zinc finger C2H2 type domain signature. 44 67 IPR013087 -
Mtr1g1207 284 Pfam Zinc finger, C2H2 type 13 37 IPR013087 -
Mtr1g1207 284 Pfam Zinc finger, C2H2 type 83 107 IPR013087 -
Mtr1g1207 284 Pfam Zinc finger, C2H2 type 173 198 IPR013087 -
Mtr1g1207 284 SMART c2h2final6 83 107 IPR013087 -
Mtr1g1207 284 SMART c2h2final6 173 198 IPR013087 -
Mtr1g1207 284 SMART c2h2final6 143 164 IPR013087 -
Mtr1g1207 284 SMART c2h2final6 42 67 IPR013087 -
Mtr1g1207 284 SMART c2h2final6 115 140 IPR013087 -
Mtr1g1207 284 SMART c2h2final6 204 230 IPR013087 -
Mtr1g1207 284 SMART c2h2final6 13 37 IPR013087 -
Mtr1g1207 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 72 IPR013087 -
Mtr1g1207 284 SUPERFAMILY beta-beta-alpha zinc fingers 79 109 IPR036236 -
Mtr1g1207 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1207 Mtr-Chr1 14307564 14309648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1207 10 233 C2H2 Transcription Factor Family AT1G72050 51.636 4.87e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g1207 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1207 K09191 - gmx:100801812 457.218