Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1189 ATGGAACCCATTGATGAAAACGAAGAGCATGTTATAAATGAGACCGTCAATAGTGATTCATATGTTGGTGATTTAGATGCTAACAATTTTGAACAACCTTCTCTTGGAATGGAATTTGAGTCACAGGAAGATGCTTATTCTTTCTATGTTCGATATGCTAAATGTGTCGGATTTGGTGTATCCATTAAAAGCAGTCGCCGTTCAAAAATTTCTAGACAATTTATTGATGTGAAATATGCTTGCACAAGATATGGGAAAAAACGAGAGTCGACCGCACAAAATCCACGTCCTTGTTTGAAGGTGGAATGTGAGGCTGGCTTACATATTAAAAGAAGATGTGATGGAAAATGGGTGGTCCATGGCTTCATCAAAGATCACAATCATGAACTTTTTCCAACATATGCACATTATTTTCCATGCCATAGAACAATCAATAAAGCTCAACAGAATTGTATTGAAACTTTGCAACATGTTGGAGTGAGAACAAGCAAAATCTTTGCCACAATGGCCAAACAACACGGAGGATATGAGAAAGTTGGTTGCTTGGAGAAAGATGTTAGAAATTATTTAGATAAGGACCGTCGTTTGAATTTAGAATCAGGAGATGCAAAGGCAATGCTGGAGTATTTTATACGTATGCAAGAAGAAAATTCAAGATTCTTTTATGCATTTGATTTGGATGATGATGGTCGTGTAAAAAATGTATTTTGGGTGGATGGAAAGGGTAGAGATGATTATAAAGTGTTTGGAGATGTGATTTCCTTTGATACTACATATATCACAAACAAATATAAAATGCCATTTGCTTCATTCATTGGTGTGAATAATCACTTTCAGTCAAGATTACTCGGTTGTGCATTACTAGCAAATGAGACCTCTGAGAGTTTCAAATGGTTGATGAAAACATGGCTTAAGGCAATGGGTGGGAAACCTCCAAATGCAATGATAACTGACCAAGACAGAGCAATGAAAGTGGCTATTGAAGAGGTATTTCCAAATACCCGACATCGTTTTTGTCTTTGGCATATACTTAGAAAGGTGCCTGAGAAGCTTGGTCATGTAATAAGAAATAATGAAGATTTCATGGGATATTTTGATGCATGCATATACAAGTCTCTGTCAATACAACAGTTTGAAGTTAATTGGGCAGAAATGGTAGAGAAATTTCAACTATCAAACTCAGAGGATGGGTGGATTCAGTCTTTATATGAAGAACGTAAACATTGGGTTCCTGTTTACATGAAAGATACCTTTTTCGGTGGCATGTCAACAACTCAAAGATCAGAGAGCATCAACTCTTTTTTTGACAAATATGTAGGCAAGAAAACTACATTGAAAGAATTTGTTGAAAAATATGAAGTTGCTTTGCAAGATAGGGAAGAAGCAGAAATGCATGCTGATTTTAATACATGGCATAAACAACCAGTTCTTAAAACTCCATCACCTTTTGAGAAGCAAATGTCAATGATTTATACGCATGAAGTATTCAAAAAGTTCCAAGTTGAAATTATGGGATTATCTGGATGTCATCTTAAGAAAAGGAATGAAGATAGTCAGCTCACCTCTTTTACAATATTCGACTTTGGAAATAGGGAAGAATTTGTTGTAGAGTGGGATGCATCGAAAGAGAAAATTTCTTGCATATGTTGTTTGTTTGAGTATAATGGGTATCTTTGTAGACATTCATTGATGGCCCTCCAATATAGTGGTATCTTTGCTGTCGCATCACACTACATATTGAAAAGATGGACAAAGGATATCAGAAGTCGGCATCATAAAAGAAAAGTTAATGAAGATATTTGTTCGAAGAAGGAGAGATATGATCGTTTGTATCCAAAGGCCTCTCAATTGTTGGAGGAAGGATCATTAACTAATGAGAGTTATAACTTTGCATGTCATGCACTGGAAGAGGCCTTGAAACAATGTGCATTCCTTAACCGATCCTTAAAAAATAGCCAAGAAAATAGCAGGAAGAGCACTTTGCTTGACAAGAAACTACTTGATCCTCAAGATTCAAAAACAAAAGGGGCACCGAAAAGAATAAAGAGCGGCATTGAAAGAGGTCGAAAGAGAAAATCTACTGGTAGCGTGAAAAAGGCTGCAATCGTTGAAAAAGAAGCAATATTTGTCGCTGATGAAGTTGTCGCTGCATCAACATCAATGGCAAAACAGTAG 2175 0.3632 MEPIDENEEHVINETVNSDSYVGDLDANNFEQPSLGMEFESQEDAYSFYVRYAKCVGFGVSIKSSRRSKISRQFIDVKYACTRYGKKRESTAQNPRPCLKVECEAGLHIKRRCDGKWVVHGFIKDHNHELFPTYAHYFPCHRTINKAQQNCIETLQHVGVRTSKIFATMAKQHGGYEKVGCLEKDVRNYLDKDRRLNLESGDAKAMLEYFIRMQEENSRFFYAFDLDDDGRVKNVFWVDGKGRDDYKVFGDVISFDTTYITNKYKMPFASFIGVNNHFQSRLLGCALLANETSESFKWLMKTWLKAMGGKPPNAMITDQDRAMKVAIEEVFPNTRHRFCLWHILRKVPEKLGHVIRNNEDFMGYFDACIYKSLSIQQFEVNWAEMVEKFQLSNSEDGWIQSLYEERKHWVPVYMKDTFFGGMSTTQRSESINSFFDKYVGKKTTLKEFVEKYEVALQDREEAEMHADFNTWHKQPVLKTPSPFEKQMSMIYTHEVFKKFQVEIMGLSGCHLKKRNEDSQLTSFTIFDFGNREEFVVEWDASKEKISCICCLFEYNGYLCRHSLMALQYSGIFAVASHYILKRWTKDIRSRHHKRKVNEDICSKKERYDRLYPKASQLLEEGSLTNESYNFACHALEEALKQCAFLNRSLKNSQENSRKSTLLDKKLLDPQDSKTKGAPKRIKSGIERGRKRKSTGSVKKAAIVEKEAIFVADEVVAASTSMAKQ* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1189 724 Pfam MULE transposase domain 252 345 IPR018289 -
Mtr1g1189 724 Pfam FAR1 DNA-binding domain 47 132 IPR004330 -
Mtr1g1189 724 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 17 665 - -
Mtr1g1189 724 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 17 665 IPR031052 GO:0006355
Mtr1g1189 724 Pfam SWIM zinc finger 537 568 IPR007527 GO:0008270
Mtr1g1189 724 ProSiteProfiles Zinc finger SWIM-type profile. 534 570 IPR007527 GO:0008270
Mtr1g1189 724 MobiDBLite consensus disorder prediction 667 697 - -
Mtr1g1189 724 Coils Coil 635 655 - -
Mtr1g1189 724 SMART 26again6 545 572 IPR006564 GO:0008270
Mtr1g1189 724 MobiDBLite consensus disorder prediction 667 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1189 Mtr-Chr1 13944412 13946786 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g1189 MULE 8.5e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1189 - - dzi:111309578 876.315