Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1188 ATGGAAATTTTAATTTCTATTGTTGGAAAAATAGCAGAATATACCGTTGTGCCTATTGGACGTCAAACAAGTTACTTGATATTCTACAAAGGTAACTTCAAGACGTTAAAGGATCATGTTGAAGACCTTGAGGCTGCAAGAGAAAGAATGATCCATTCAGTTGAAAGTGAAAGGGAAAATGGTAAAGAAATTGAAAAAGATGTTCTGAATTGGTTGGAGAAAGTGGATGGGGTCATTAAAGAGGCGAATCAGCTTCAAAACGATTCTCGCAATGCAAATGTTAGGTGCTCACCATGGTCATTCCCAAATTTAATTTTGCGTCATCAACTAAGTAGGAATGCCAGAAAAATTGCAAATAATGTTGTTGAAGTTGTTCAAGGGAAAGAAAAGTTTAATTCAGTTGGTCACTTTCCCCCTCTAGATGTAGTAGCGTCCTCCTCAACAAGAGATGGTGAAAAGTATGACACAAGGGAGTCGCTTAAGGAGGACATTGTGAAGGCTTTAGCAGATCCTACTTCACGCAACATTGGGGTCTATGGGTTGGGTGGAGTGGGGAAGACCACTCTGGTGGAGAAAGTTGCTCAAATAGCCAAGGAACTTAAATTGTTCCATAAAGTGGTTAAGACAGAAGTTTCTAAAAATCCAGACATTAAAAGAATTCAAGGGGAGATTGCCGATTTCATGGGTCTGCGATTTGAAGAGGAGACTATTCTTGGCAGAGCACAACGCCTAAGACAAACAATCAAGATGAAGAAAAGCATCCTTATCATTCTAGATAACATATGGACCATACTTGATTTGAAAGAAGTGGGGATACCAGTTGGTGATGAACATAATGGTGATGAACATAATGGATGCAAATTGTTGATGACAAGTAGAGATGAAGATGTGTTGCTTCAAATGGATGTCCCAAAGGATTTCACTTTCAAAGTTAAACTTATGCGTGAAAACGAGACATGGAGTTTGTTTCAATTTATGGCAGGGGATGTGGTTAAAGATAGCAATTTGAAAGATCTACCATTTCAAGTGGCCAGAAAATGTGAAGGTTTGCCTCTTAGGGTAGTGACAGTAGCGCGTGCAATGAAAAATAAGAGGGATGTTCAGTCTTGGAAAGATGCATTAAGGAAATTACAAAGTAATGATCATACAGAGATGGACCCGGGAACTTATTCTGCTTTGGAATTGAGTTACAACTCATTGGAGAGTGATGATATGAGGGCTCTCTTCTTGCTTTTTGCATTATTCCTAGATGAACAAATAGAGTACTTTCTCAAAGTTGCAATGGGGTTGGACATATTGAAGCATCTTAATGCCATAGATGATGCAAGAAACAGACTTTACAGAATAATCAAATCTTTGGAGGCGGCTTGTCTTTTGCTTGAAGTTAAAACAGGTGGAAAGATCCAAATGCATGACTTTGTTCGTGATTTTGCTATCTCCATAGCACGTAGGGACAAGCATATATTTCTAAGAAAACAATCTGATGAGGAATGGCCAACCAATGATTTTCTAAAAAGGTGCACACAGATCTTTCTAAAAAGATGTCATACACTCGAGCTTCCTCAAACGATTGATTGTCCAAACGTTAAGCTTTTCTATTTGGGCAGTAACAATTCTTCTTTCAAAATCCCTGATGCTTTTTTTGAGGGTATGAGAAGCCTTAGAGTGCTAGATTTAACGCACTTGAACTTGTTATCATTACCCACATCGTTTCGGTTATTAAGAGACCTTCAAACATTGTGTTTGCATCAATGCGTTTTGGAAAATATGGATGCACTAGAAGCTTTGCAAAATTTAGAAATTCTTTGCCTTTGGAAATCTTCAATGATCAAGTTGCCAAGAGAAATAGGGAAATTGATTCGATTGAGAATGCTTGACTTGAGCCATTCAGGAATAGAAGTAGTCCCACCCAACATCATATCAAGCTTGACTAAATTGGAGGAGTTGTACATGGGTAATACCTCTATTAATTGGGAAGATGTGAGTTCAACGGTTCATAATGAAAATGCTAGTCTTGCCGAGCTTCGAAAACTACCCAACTTGACAGCTCTAGAATTACAAATTCGTGAGACTTGGATGTTGCCAAGGGACTTGCAATTGGTGTTTGAGAAGCTGGAAAGATATAAAATAGCTATTGGAGATGTATGGGATTGGTCTGACATCAAGGATGGAACCTTAAAAACATTGATGCTCAAACTTGGTACAAACATACATTTGGAGCATGGAATTAAAGCATTGATTAAAGGTGTTGAGAATTTGTATTTGGATGATGTAGATGGAATTCAAAATGTGCTTCCTAACCTAAATAGAGAAGGATTTACATTGCTGAAACATCTCCACGTCCAAAATAATACTAACTTGAATCACATTGTTGACAATAAAGAGAGAAATCAAATCCATGCATCCTTTCCCATCTTGGAAACACTAGTACTTCTTAATCTTAGAAACTTGGAGCATATATGTCATGCTCAACCTTCGGTTGCTTCTTTTGGAAGTCTCAGTGTTATCAAAGTAAAAAATTGCATCCAGTTAAAGTATCTCTTCTCCTTTACAATGGTTAAAGGACTTTCTCACCTTTGTAAGATTGAAGTTTGTGAGTGCAATTCTATGAAGGAGATAGTGTTCAGAGACAACAATTCAAGTGCTAATATCAGTGATGAAAAAATCGAGTTTCTTCAATTGCGTTCTTTGACTTTAGAACATTTGGAGACACTTGATAATTTCGCCTCTGATTATTTGACACATCATAGAAGTAAGGAAAAGTATCAAGGTCTAGAGCCTTATGCTTATACTACACCATTTTTTAATAATGCTCAGGTTGCATTTCCTAATTTGGATACCCTTAAATTGAGCTCACTTCTCAATTTGAATCAAATTTGGGATGACAATCATCAATCAATGTGCAACTTGACTAGCTTGGTTGTGGATAATTGTGTTGGATTGAAGTATTTATTTCCCTCTTCTTTGGTTGAAAGTTTTATGAACCTCAAACACCTTGAAATAAGTAACTGTCATATGATGGAGGAGATAATAGCTAAAAATGACGGAAACAATGCACTGAAAGAGGTTCGTCTTTTAAATTTAGAAAAAATCATATTGAAGGATATGAACAACTTGAAGACAATATGGCATCGCCAATTTGAAAAATTGAAGATGTTGGAAGTGAACAATTGTAAGAAAATTGTGGTGGTTTTTCCTTCTTCAATGCAAAACACATATAATGAGCTTGAGAAGTTGGAGGTTACAAATTGTGCTTTAGTTGAAGAGATATTTGAATTGAATTTGAATGAAAATAACAGTGATGAGGTTACGACACATTTGAAAGAAGTTACTATAGATGGACTGTTGAAGCTGAAAAAGATATGGAGTGGAGATCCTGAAGGAATTCTTAGTTTTCAAAATCTAATATATGTACAACTAGAAAGTTGTGCAAGCTTGGAGTATCTATTACCATTCTCCGTAGCCACTCGTTGCTCACATCTCAAGGAACTTGTTATAAAATGGTGTGAAAACATTAAGGAAATTGTTGCAGAGGAGAAAGAATCTAGCTTGAGTGCAGCTACCATATTTGAGTTTAATCAACTGAGTACTTTATTGCTTTGGAACTTAACTAAACTCAATGGTTTCTATGCTGGAAATCATACTCTAGCATGCCCATCTTTGAGAAAAATCAATGTCTCTAGATGTACAAAGTTGAAATTGTTCAGAACACTATCTACAAGAAGCTCCAATTTTCGAGATGACAAACCCTCTGTTTTAACGCAACCACCACTTTTCATTGCCGAAGAGGTGATTCCAAACTTGGAGCTGTTGAGGATGGTACAGGCGGATGCTGACATGATATTGCAAACCCAAAACTCAAGTTCCCTCTTTTGCAAAATGACCCATCTTGGATTGGCTAGCTATAACACCGAAGATGCTAGATTTCCTTATTGGTTTCTTGAAAATGTGCATACTCTTGAGAAACTACGTGTTGAGTGGTGTTGCTTCAAGAAGATATTCCAAGATAAAGGAGAAATAAGTGAGAGGACTCATACACAAATCAAAACACTAATGTTATATAAATTACCTAAACTTCAACATATATGTGATGAAGGATCTCAAATTGACCCAGTTCTTGAGTTCCTTGAATACTTAAGGGTTCGTAGTTGTTCTAGTTTGACAAATTTGATGCCTTCCTCCGCCACCCTTAATCATCTCACAAAGTTAGAGGTAATAAAATGCAATGGGCTAAAATATTTGATCACAACTCCTACTGCACAAAGTTTAGACAAGCTCACTGTGCTGAAGATAAAAGATTGTAATTCACTTGAAGAAGTAGTTAATGGAGTAGAAAATGTTGACATTGCTTTTATTAGTTTACAAATTTTGAATTTGGAATGTTTGCCAAGTCTCATCAAGTTTTCCTCTAGTAAGTGTTTCATGAAGTTTCCATTATTGGAGGAAGTAATTGTGAGGGAATGTCCTCAAATGAAGATTTTTTCAGAGGGAAACACAAGTACACCAATTCTTCAAAAAGTTAAAATTGCAGAAAATAATTCAGAATGGCTTTGGAAGGGAAATCTAAACAATACAATATACAACATGTTTGAAAATAAGGTTGCATTTGGTAAACTCAAGTACTTAGCCTTATCTGACTATCCTGAGCTAAAGGATGTGTGGTATGGCCAACTTCATTGCAATGTGTTCTGCAGTTTGAAACATCTTGTCGTGGAAAGGTGTGATTTTTTATCACATGTACTTTTTTCATCAAATGTAATGCAATTGCTACAGACATTGGAAGAACTAGAAGTTAAAGATTGTGATTCATTAGAAGCAGTGTTTGATGTAAAAGGTATGAAGTCACAAGAAATATTGATAAAAGAAAGCACTCAATTGAAAAGATTGAGTTTGTCTACTTTACCCAAATTGAAGCACATATGGAATGAGGATCCTCATGAAATTATCAGCTTTGTAAACTTACACAAGGTGGATGTTTCTTTGTGTCAAAGCTTGTTATATGTCTTTCCATATTCACTATGCCCAGATCTTGGACATCTTGAAATGCTTGAGATAAGTTCTTGCGGAGTCAAGGAAATTGTTGCAATGGAAGAAACTGTATCAATGGAAATTCAATTTAATTTCCCCCAATTGAAAATCATGACACTGCGTCATTTGTCAAATCTCAAGAGTTTCTATCAAGGAAAGCATACTTTAGATTGCCCTTTATTGAAGACTTTTAATGTATATCGTTGTGAAGCATTAAGAATGTTTTCTTTCAACAATTCAGACTTGCAACAACCTTACTCGGTTGATCAAAACCAGGGCATGCTATTCCAACAACCCCTGTTTTGTATTGAAAAGTTGAGCCCCAACCTGGAGGAATTGGCAGTAAGTGGCACGGATATGTTGGGGATATTGAATGGTTGTTATCAAGAAAATATATTTCATAAAGTTGAATTTCTTCGTTTGCAACTGTTTGATGAAACTCCTACTATTTTTATGAATGACTTACACATAATATTTCCTAATCTTCAAGAATTTCAAGTCCGTAATAGTTCCTTTGAAATATTGTTCCCCACTAAAGGAGCCACTGATCATCTCAATATGCAAATTTCAAAGCAAATGAGAATGTTGATGCTTTTTGAATTGGAAAAGCTCGAGCACATCTGGCAGGAAGAATTTCCATTGGATCATCCTCTTCTACAACATCTTCAAGAATTATTTGTATTGAATTGTCCAAGTTTGATAAGCTTGGTACCACCGTTCGCATCTTTCACAAATTTAACCTATTTGAAAGTGGACAATTGCAAAGAGTTGGTCTATTTGATAACATATTCAACAGCTAAAAGCCTAGTTCAACTCAAAACATTAATAATAGAGAATTGTGAGAAGATGTTGGATGCTGTGAAGATTGATGAAGAAAAAGGAGAGGAGGACATCATATTTGAAAACTTGGAATACTTGGAACTTGCTTCTTTGTCAAGTTTGAGAAGCTTCTGCTATGGGAAACAAGCATTCATATTCCCATATTTGCTTTGTTTCATCGTTAAAGGATGCCCTCAAATGAAGATCTTCTCATCTGCACTCACAGTAGCACCGTGCCTCACATCAATTGAGGTGGAAAAAGAAAATATGCGATGGAAAGGTGATCTTAACACAACTATTGAACAAATGTTCAAAGAAAAGGAAGTCCCACATTCTAATTAA 6189 0.3611 MEILISIVGKIAEYTVVPIGRQTSYLIFYKGNFKTLKDHVEDLEAARERMIHSVESERENGKEIEKDVLNWLEKVDGVIKEANQLQNDSRNANVRCSPWSFPNLILRHQLSRNARKIANNVVEVVQGKEKFNSVGHFPPLDVVASSSTRDGEKYDTRESLKEDIVKALADPTSRNIGVYGLGGVGKTTLVEKVAQIAKELKLFHKVVKTEVSKNPDIKRIQGEIADFMGLRFEEETILGRAQRLRQTIKMKKSILIILDNIWTILDLKEVGIPVGDEHNGDEHNGCKLLMTSRDEDVLLQMDVPKDFTFKVKLMRENETWSLFQFMAGDVVKDSNLKDLPFQVARKCEGLPLRVVTVARAMKNKRDVQSWKDALRKLQSNDHTEMDPGTYSALELSYNSLESDDMRALFLLFALFLDEQIEYFLKVAMGLDILKHLNAIDDARNRLYRIIKSLEAACLLLEVKTGGKIQMHDFVRDFAISIARRDKHIFLRKQSDEEWPTNDFLKRCTQIFLKRCHTLELPQTIDCPNVKLFYLGSNNSSFKIPDAFFEGMRSLRVLDLTHLNLLSLPTSFRLLRDLQTLCLHQCVLENMDALEALQNLEILCLWKSSMIKLPREIGKLIRLRMLDLSHSGIEVVPPNIISSLTKLEELYMGNTSINWEDVSSTVHNENASLAELRKLPNLTALELQIRETWMLPRDLQLVFEKLERYKIAIGDVWDWSDIKDGTLKTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVLPNLNREGFTLLKHLHVQNNTNLNHIVDNKERNQIHASFPILETLVLLNLRNLEHICHAQPSVASFGSLSVIKVKNCIQLKYLFSFTMVKGLSHLCKIEVCECNSMKEIVFRDNNSSANISDEKIEFLQLRSLTLEHLETLDNFASDYLTHHRSKEKYQGLEPYAYTTPFFNNAQVAFPNLDTLKLSSLLNLNQIWDDNHQSMCNLTSLVVDNCVGLKYLFPSSLVESFMNLKHLEISNCHMMEEIIAKNDGNNALKEVRLLNLEKIILKDMNNLKTIWHRQFEKLKMLEVNNCKKIVVVFPSSMQNTYNELEKLEVTNCALVEEIFELNLNENNSDEVTTHLKEVTIDGLLKLKKIWSGDPEGILSFQNLIYVQLESCASLEYLLPFSVATRCSHLKELVIKWCENIKEIVAEEKESSLSAATIFEFNQLSTLLLWNLTKLNGFYAGNHTLACPSLRKINVSRCTKLKLFRTLSTRSSNFRDDKPSVLTQPPLFIAEEVIPNLELLRMVQADADMILQTQNSSSLFCKMTHLGLASYNTEDARFPYWFLENVHTLEKLRVEWCCFKKIFQDKGEISERTHTQIKTLMLYKLPKLQHICDEGSQIDPVLEFLEYLRVRSCSSLTNLMPSSATLNHLTKLEVIKCNGLKYLITTPTAQSLDKLTVLKIKDCNSLEEVVNGVENVDIAFISLQILNLECLPSLIKFSSSKCFMKFPLLEEVIVRECPQMKIFSEGNTSTPILQKVKIAENNSEWLWKGNLNNTIYNMFENKVAFGKLKYLALSDYPELKDVWYGQLHCNVFCSLKHLVVERCDFLSHVLFSSNVMQLLQTLEELEVKDCDSLEAVFDVKGMKSQEILIKESTQLKRLSLSTLPKLKHIWNEDPHEIISFVNLHKVDVSLCQSLLYVFPYSLCPDLGHLEMLEISSCGVKEIVAMEETVSMEIQFNFPQLKIMTLRHLSNLKSFYQGKHTLDCPLLKTFNVYRCEALRMFSFNNSDLQQPYSVDQNQGMLFQQPLFCIEKLSPNLEELAVSGTDMLGILNGCYQENIFHKVEFLRLQLFDETPTIFMNDLHIIFPNLQEFQVRNSSFEILFPTKGATDHLNMQISKQMRMLMLFELEKLEHIWQEEFPLDHPLLQHLQELFVLNCPSLISLVPPFASFTNLTYLKVDNCKELVYLITYSTAKSLVQLKTLIIENCEKMLDAVKIDEEKGEEDIIFENLEYLELASLSSLRSFCYGKQAFIFPYLLCFIVKGCPQMKIFSSALTVAPCLTSIEVEKENMRWKGDLNTTIEQMFKEKEVPHSN* 2063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1188 2062 Pfam NB-ARC domain 158 396 IPR002182 GO:0043531
Mtr1g1188 2062 Gene3D Ribonuclease Inhibitor 1773 2043 IPR032675 -
Mtr1g1188 2062 PANTHER RPP4C3 1530 1618 - -
Mtr1g1188 2062 PANTHER RPP4C3 23 1112 - -
Mtr1g1188 2062 PANTHER RPP4C3 1649 1756 - -
Mtr1g1188 2062 PANTHER RPP4C3 1907 2048 - -
Mtr1g1188 2062 PANTHER RPP4C3 1377 1525 - -
Mtr1g1188 2062 PANTHER RPP4C3 1131 1235 - -
Mtr1g1188 2062 PANTHER - 1907 2048 - -
Mtr1g1188 2062 PANTHER - 1649 1756 - -
Mtr1g1188 2062 PANTHER - 1530 1618 - -
Mtr1g1188 2062 PANTHER - 1377 1525 - -
Mtr1g1188 2062 PANTHER - 23 1112 - -
Mtr1g1188 2062 PANTHER - 1131 1235 - -
Mtr1g1188 2062 Gene3D Ribonuclease Inhibitor 1418 1516 IPR032675 -
Mtr1g1188 2062 Gene3D Ribonuclease Inhibitor 726 923 IPR032675 -
Mtr1g1188 2062 Gene3D Ribonuclease Inhibitor 1236 1417 IPR032675 -
Mtr1g1188 2062 SUPERFAMILY RNI-like 1121 1409 - -
Mtr1g1188 2062 PRINTS Disease resistance protein signature 175 190 - -
Mtr1g1188 2062 PRINTS Disease resistance protein signature 248 262 - -
Mtr1g1188 2062 PRINTS Disease resistance protein signature 347 361 - -
Mtr1g1188 2062 PRINTS Disease resistance protein signature 549 565 - -
Mtr1g1188 2062 SMART AAA_5 172 307 IPR003593 -
Mtr1g1188 2062 Coils Coil 40 60 - -
Mtr1g1188 2062 Gene3D - 142 307 IPR027417 -
Mtr1g1188 2062 SUPERFAMILY RNI-like 1623 1960 - -
Mtr1g1188 2062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 411 IPR027417 -
Mtr1g1188 2062 SUPERFAMILY RNI-like 941 1094 - -
Mtr1g1188 2062 CDD AAA 157 313 - -
Mtr1g1188 2062 Gene3D Ribonuclease Inhibitor 940 1198 IPR032675 -
Mtr1g1188 2062 Gene3D Ribonuclease Inhibitor 478 693 IPR032675 -
Mtr1g1188 2062 Gene3D - 314 401 IPR042197 -
Mtr1g1188 2062 SUPERFAMILY RNI-like 1373 1689 - -
Mtr1g1188 2062 Gene3D Ribonuclease Inhibitor 1524 1769 IPR032675 -
Mtr1g1188 2062 SUPERFAMILY L domain-like 469 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1188 Mtr-Chr1 13936833 13968987 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1188 174 684 WRKY Transcription Factor Family AT5G45050 22.317 5.22e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1188 - - mtr:MTR_1g037010 3264.94