Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1180 ATGGAAATTTTAATTTCGATTGTTGGAAAAATAGCAGAATATACCGTTGTGCCTATTGGACGTCAAGCAAAATACTTGATATTCTACAATGGTAACTTCAAGACGTTAAAGGATCATGTTGGAGACCTTGAAGCTGCAAGAGATAGAGTGCTCCATTCAGTTGAAAGAGAAAGGGGAAATGGTAGAGAAATTGAAGAAGATGTTCTGAATTGGTTGGAGAAAGTGGACGGGGTCATTAAAGAGGCGAATCAGCTTCAAAACGATTCTCGCAATGCAAATGTTAGGTGCTCACCGTGGTCATTCCCAAATTTAATTTTGCGTCATCAACTAAGTAGGAATGCCACAAAAATTGCAAATAATGTTGTTGAAGTTCAAGGGAAAGAAAAGTTTAATTCATTTGGTCACCTTCCCCCTCTAGATGTAGTAGCCTCCTCCTCCTCAACAAGAGATGGTGAAATGTATGACACAAGAGAGTCACTAAAGAAGGACATTGTGAAGGCTTTAGGAGATTCTACTTCATGCAACATTGGGATCTATGGGTTGGGTGGGGTGGGCAAGACCACTCTAGTGGAGAAAGTTGCTCAAATAGCCAAGGAAAATAAATTGTTCGATAAAGTGGTTAAGGCAGAAGTATCGAAAAAACCAGACATTAGAAGAATTCAAGGGGAGATTGCAGATTTCTTGGGTCTGCGATTTGAAGAGGAGAGTATTCCCGGCAGAGCAGAACGCCTTAGACAAAGAATCAAGATGGAGAGAAGTGTCCTTATCATTCTAGATAACATATGGACCGTACTTGATTTGAAAGAAACGGGGATACCAGTTGGTGATGAACATAATGGTTGCAAATTGTTGATGACAAGTAGAAATCAAGATGTGTTGCTGCAAATGGATGTCCCAAAGGATTTCACTTTCAAAGTTGAACTTATGAGTGAAAATGAGTCATGGAGATTGTTTCAATTTATGGCAGGGGATGTGGTTAAAGATAGCAATTTGAAAGATCTACCATTTCAAGTGGCCAGAAAATGTGCAGGTTTGCCTCTTAGGGTAGTGACAGTAGCGTGTGCAATGAAAAATAAGAAGGATGTCCGATCATGGAAATATGCATTAAGGAAATTGGAAAGTCATGACTCATTAGATGTGTTAACTTATTCTGCTTTAGAATTGAGTTATGACTCATTGGATAGTGATGAAATGAGGGACCTTTTCTTGCTTTTTTCTTTACTTCCAGGTAATGATGTATTGTACTTTCTGAAAGTTGCAATGGGTCTAGACATATTAAAACATGTTAATACCGTTGATGATGCAAGAAATAGACTTTACACAATGATCGAATCATTGGAGGCATCTTGTCTTTTGCTTGAAGTTAAAGTAGATGGAAAGATCCAAATGCATGACTTTGTTTGTGAGTTTGCTATCTCCATAGCATGCAGGGACAAACATGTATTTCTAATGAAACAACGAGATGATCAGGAATGGCCAACCAATGCTTTTTTACAAAGGTGCACACATATTGTTGTAAATCACTGTCATATGCACGAGCTTCCTCAAACAATTGATTGTCCTAACATTAAGTTTTTCTGTTTGGCTAGTGGGAATCGTTCTTTAAAAATCCCAGATGATTATTTTGAGGGTATGGGAAGCCTTAGAGTGCTAGATTTAACATGTCTGAACTTGTCTTCATTACCCACTTTGTTTCAGTTCCTAACCGATCTTCAAACATTGTGTTTGAATTTCTGCGTTTTGGAAAATATGGATGCAATAGAAGCTTTAAAAAATTTGAAAATTCTTTGCCTCTGGAATTCTTCAATGATCAAGTTGCCAAGACAAATAGGGCAACTGACTCAATTGAGAATGCTTGATTTGAGAAGTTCAGGAATAGATGTAATCCCTCACAACATTATATCAAGCTTGACTAAATTGGAGGAGTTGTACATGGGAAATACCTCTATTAATTGGGAAGATGTGAGTTCAACGGTTCATAATGAAAATGCTAGTCTTTCCGAGCTTCGAAAACTACCCAAATTGACAGCTCTAGAATTACAAATTCGTGAGACTTGGATGCTGCCAAGGGACTTGCAATTGGTGTTTGAGAAGCTGGAAAGATATAAAATAGCTATTGGAGATGTATGGGACTGGTCTGACATCAAGGATGGAACCTTAAAAACATTGATGCTCAAACTTGGTACAAACATACATTTGGAGCATGGAATTAAAGCATTGATTAAAGGTGTTGAGAATTTGTATTTGGATGATGTAGATGGAATTCAAAATGTGCTTTATCAACTAAATGGAGAAGGATTTCCATTTCTGAAACATCTCCACATTCAAAATAATGCCAACCTGAAGCACATTGTTGACTATAAAGAGAGGAATCAAATCCATATGTCCTTTCCCATCTTGGAAACACTAGTACTTCTTAATCTTAAAAACTTGGAGCATATATGTCATGGTCAACCTTCAGTTGCTTCTTTTGGAAGTCTCAGTGTTATCAAAGTAAAAAATTGCGTCCAGTTAAAGTATCTTTTCTCCTTTACAATGGTGAAAGGACTTTCTCACCTTTGTAAGATTGAAGTTTGTGATTGCAATTCTATGAAGGAGATAGTGTTCAGAGACAACAATTCAAGTGCTAATAATGATATCACTGATGAAAAAATCGAGTTTCTTCAATTGCGTTCTTTGATTTTAGAACATTTGGAGACACTTGATAATTTCGCCTCTGATTATTTGACACATCTTAGAAGTAAGGAAAAGTATCAAGGTGTAGAGCCTTATGCTTCTACTACACCATTTTTCAATGCTCAGGTTGAGTTTCCTAATTTGGATACCCTTAAATTGAGCTCACTTCTCAATTTGAATAAAATATGGGATGACAATCATCAATCAATGTGCAACTTGACTAGCTTGATTGTGGATGATTGTGTTGGATTGAAGTATTTATTTCTCTCTACTTTGGTTGAAAGTTTTATGAACCTCAAACACCTTGAAATAAGTAATTGTCCTATGATGGAAGAGATTATAGCTAAAGAAGACAGAAACAATGCATTGAAAGAGGTTCATTTTTTGAAATTAGAGAAAATCATACTGAAGGATATGGACAACTTGAAGTCAATATGGCATCGCCAATTTAAAACATCAAAGCTGTTGGAAGTGAACAATTGTAAGAAAATTGTGGTGGTTTTTCCATCTTCAGTGCAAAACACATATAAGGAGCTAGAGAAGTTGGAGGTTACAAAATGTGCTTTAGTTGAAGAGATATTTGAATTGAATTTCAATGAAAACAACAGTGAAGAGGTTAAGACACATTTGAAAGAAGTTACTATTGATGGATTGTCAAATCTGAAAAAGATATGGAATAGAAATCCTGATGGAATTCTTAGTTTTCAAAATCTAATAAATGTACAATTGAAACATTGTTCAAACTTGGAGTATTTATTACCATTCTCCGTAGCCACTCGTTGCTCACAGCTTAAGGAACTTGATATAGGATGTTGTGGGAACATGAAGCAAATTGTTGCAGAGGAGAAAGAATCTAGCATGAATGAAGCTCCCATATTTGAGTTTAATCAACTAACTACTTTACGGCTTTACAACTCAAATAAACTCAATGGTTTCTATGCTGGAAATCATACTCTGCTATGTCCATCTTTGAAGAAATTTAGTGTTACCAAATGCGCAAAGTTGAATTTGTTCAGAACTCTGTCGACAAAAAACTCAAATTTTCAAGATGATAAACTCTCTGTTTCAACTAAACAACCACTTTTCATTGCTGAAGAGGTGATTCCAAACTTGGAGATGTTGAAGATGCCACGGGCGGATGCTGACATGATATTGCAAACCCAAAACTCAAGTGCCCTCTTTAGCAAAATGATTTGGATTAGCTTTAGTAGCTATAACACTGAAGATGCTACATTTCCTTATTGGTTTCTTGAAAATGTGCATACTCTTGAGACACTAGTTGTTGAGTGGAGTTGCTTCAAGAAGATATTTCAAGATAAAGGAGAAATAACTGAGAAGACTCATACACAAATAAAAAATCTGATATTGCATGAATTGCCTAAACTTCAACATATATGTGAGGAAGGATCCCAAATTGACCCAGTTCTTGAGTTCCTTGAATGCTTAGAGGTTCTTAGTTGTTCTAGTCTGACAAATTTGATGCCTTCCTCTGTCACCCTTAATCATTTGACACAGTTGGAGATAATAAAATGCAATGGACTAAAATATTTAATCACAACTCCTACTGCGCAAAGTTTGGACAAACTCACAGTGTTGAAGATAAAAGATTGTAATTCACTTGAAGAAGTAATTACTGGATTAGAAAATGGTGACATTGCTTTTATAAGTTTACAAATTTTGAAATTGGAATGTTTGCCAAGGCTCATCAAATTTTCCTCTAGTAAGTGTTTCATGAAGTTTCCATTGTTGGTGGAAGTAATTGTGATTGAATGTCCTCGCATGAAGAGTTTTTCAACGGGAAACACAAGTACACCAACTCTTCAAAAAGTTAAAATTGCAGAAAATAATTCAGAATGGCTTTGGAAGGGAAATCTAAACAATACAATATACAACATGTTTGAAAAAAAGGTTGCATTTGGTAAATTCAAGTACTTAGCCTTATCTGACTATCCTGAGCTAAAGGATGTGTGGTATGGCCAACTTCATTGCAATGTGTTCTGCAATTTGAAACATCTTGTCGTGGAAAGGTGTGATTTTTTATCACATGTACTTTTTCCATCAAATGTAATGCAAGTGCTACAGACATTGGAAGAACTAGAAGTAAAAGATTGTGATTCATTAGAAGCAGTGTTTGATGTGAAAGGTATGAAGTCACAAGAAATATTGATAAAACAAAGCACTCAATTGAAAAGATTGAGTTTGTCTACTTTACCCAAATTGAAGCACATATGGAATGAGGATCCTCATGAAAATATCAGCTTTGGAAACTTACACAAGGTGGATATTTCTATGTGTCAAAGCTTGTTATATGTCTTTCCATATTCACTATGCCCAAATCTTGGACATCTTGAAATGCTTGAGATAAGTTCTTGCGGAGTCAAGGAAATTGTTGCAATGGAAGAAACTGTAACAATGGAAATTCAATTTAATTTCCCCCAATTGAAAATCATGGCATTGCGTCGTTTGTCAAATCTCAAGAGTTTCTATCAAGGAAAGCATACTTTAGATTGCCCTTTATTGAAGACTTTTAATGTATATCGTTGTGAAGCATTAAGAATGTTTTCTTTCAACAATTCAGACTTGCAACAGCCTTACTCGGTTGATGAAAACCAGGACATGCTGTTCCAACAACCCCTGTTTTGTATTGAAAAGTTGAGCCCCAACCTGGAGGAATTGGCAGTAAATGGCACGGATATGTTGGGGATATTGAATGGTTGTCATCAAGAAAATATATTTCATAAAGTTGAATTTCTTCGTTTGCAACTGTTTGATGAAACTCCTACTATTTTTATGAATGACTTTCACATAATATTTCCTAATCTTAAAGAATTTCAAGTCCGTAATAGTTCCTTTGAAATATTGTTCCCCACTAAAGGAGCCACTGATCATCTCAATATGAAAATTTCAAAGCAAATGAGAATGTTGATGCTTTTTGAATTGGAAAAGCTCGAGTTTATATGGCATGAAGACTTTCCATTGGATCATCCTCTGCTGCAACATCTTGAAAGCTTACTTGTATTCAATTGTCCAAGTTTGATAAGCTTGGTACCATCGTCTACATCTTTCACAAATTTAACCAAGTTGGAAGTGGACGACTGCAAAGAGCTGATCTATTTGATAACATCTTCAACAGCTAAAAGCCTAGTTCAACTCAAAACATTAATAATAATGAATTGTGAGAAGATGTTGGATGTTGTGAAGATTGATGAAGAAAAAGGAGAGGAAGACATCATATTTGAAAACTTGGAATACTTGAAACTTACTTCTTTGTCAAGTTTGAGAAGCTTCTGCTATGGGAAACAAGTATTCATATTCCCATCTTTGCTTTTTTTCATTGTTAAAGGATGTCCTCAAATGAAGAGATTCTCATCACAAGTCACAGTGGCACCATACCTGACACGAATTCAAGTTGAAGAAAATAATATGCTATGGAAAGGTGACCTTAACACAACTATTGAACAACTCTTCATAGATAAGCAGGAAGTCCCACATTCTAACTAA 6177 0.3568 MEILISIVGKIAEYTVVPIGRQAKYLIFYNGNFKTLKDHVGDLEAARDRVLHSVERERGNGREIEEDVLNWLEKVDGVIKEANQLQNDSRNANVRCSPWSFPNLILRHQLSRNATKIANNVVEVQGKEKFNSFGHLPPLDVVASSSSTRDGEMYDTRESLKKDIVKALGDSTSCNIGIYGLGGVGKTTLVEKVAQIAKENKLFDKVVKAEVSKKPDIRRIQGEIADFLGLRFEEESIPGRAERLRQRIKMERSVLIILDNIWTVLDLKETGIPVGDEHNGCKLLMTSRNQDVLLQMDVPKDFTFKVELMSENESWRLFQFMAGDVVKDSNLKDLPFQVARKCAGLPLRVVTVACAMKNKKDVRSWKYALRKLESHDSLDVLTYSALELSYDSLDSDEMRDLFLLFSLLPGNDVLYFLKVAMGLDILKHVNTVDDARNRLYTMIESLEASCLLLEVKVDGKIQMHDFVCEFAISIACRDKHVFLMKQRDDQEWPTNAFLQRCTHIVVNHCHMHELPQTIDCPNIKFFCLASGNRSLKIPDDYFEGMGSLRVLDLTCLNLSSLPTLFQFLTDLQTLCLNFCVLENMDAIEALKNLKILCLWNSSMIKLPRQIGQLTQLRMLDLRSSGIDVIPHNIISSLTKLEELYMGNTSINWEDVSSTVHNENASLSELRKLPKLTALELQIRETWMLPRDLQLVFEKLERYKIAIGDVWDWSDIKDGTLKTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVLYQLNGEGFPFLKHLHIQNNANLKHIVDYKERNQIHMSFPILETLVLLNLKNLEHICHGQPSVASFGSLSVIKVKNCVQLKYLFSFTMVKGLSHLCKIEVCDCNSMKEIVFRDNNSSANNDITDEKIEFLQLRSLILEHLETLDNFASDYLTHLRSKEKYQGVEPYASTTPFFNAQVEFPNLDTLKLSSLLNLNKIWDDNHQSMCNLTSLIVDDCVGLKYLFLSTLVESFMNLKHLEISNCPMMEEIIAKEDRNNALKEVHFLKLEKIILKDMDNLKSIWHRQFKTSKLLEVNNCKKIVVVFPSSVQNTYKELEKLEVTKCALVEEIFELNFNENNSEEVKTHLKEVTIDGLSNLKKIWNRNPDGILSFQNLINVQLKHCSNLEYLLPFSVATRCSQLKELDIGCCGNMKQIVAEEKESSMNEAPIFEFNQLTTLRLYNSNKLNGFYAGNHTLLCPSLKKFSVTKCAKLNLFRTLSTKNSNFQDDKLSVSTKQPLFIAEEVIPNLEMLKMPRADADMILQTQNSSALFSKMIWISFSSYNTEDATFPYWFLENVHTLETLVVEWSCFKKIFQDKGEITEKTHTQIKNLILHELPKLQHICEEGSQIDPVLEFLECLEVLSCSSLTNLMPSSVTLNHLTQLEIIKCNGLKYLITTPTAQSLDKLTVLKIKDCNSLEEVITGLENGDIAFISLQILKLECLPRLIKFSSSKCFMKFPLLVEVIVIECPRMKSFSTGNTSTPTLQKVKIAENNSEWLWKGNLNNTIYNMFEKKVAFGKFKYLALSDYPELKDVWYGQLHCNVFCNLKHLVVERCDFLSHVLFPSNVMQVLQTLEELEVKDCDSLEAVFDVKGMKSQEILIKQSTQLKRLSLSTLPKLKHIWNEDPHENISFGNLHKVDISMCQSLLYVFPYSLCPNLGHLEMLEISSCGVKEIVAMEETVTMEIQFNFPQLKIMALRRLSNLKSFYQGKHTLDCPLLKTFNVYRCEALRMFSFNNSDLQQPYSVDENQDMLFQQPLFCIEKLSPNLEELAVNGTDMLGILNGCHQENIFHKVEFLRLQLFDETPTIFMNDFHIIFPNLKEFQVRNSSFEILFPTKGATDHLNMKISKQMRMLMLFELEKLEFIWHEDFPLDHPLLQHLESLLVFNCPSLISLVPSSTSFTNLTKLEVDDCKELIYLITSSTAKSLVQLKTLIIMNCEKMLDVVKIDEEKGEEDIIFENLEYLKLTSLSSLRSFCYGKQVFIFPSLLFFIVKGCPQMKRFSSQVTVAPYLTRIQVEENNMLWKGDLNTTIEQLFIDKQEVPHSN* 2059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1180 2058 Gene3D Ribonuclease Inhibitor 495 914 IPR032675 -
Mtr1g1180 2058 Gene3D - 309 394 IPR042197 -
Mtr1g1180 2058 PRINTS Disease resistance protein signature 175 190 - -
Mtr1g1180 2058 PRINTS Disease resistance protein signature 248 262 - -
Mtr1g1180 2058 PRINTS Disease resistance protein signature 342 356 - -
Mtr1g1180 2058 PRINTS Disease resistance protein signature 986 1002 - -
Mtr1g1180 2058 Gene3D - 140 302 IPR027417 -
Mtr1g1180 2058 SUPERFAMILY RNI-like 1616 1989 - -
Mtr1g1180 2058 CDD AAA 157 308 - -
Mtr1g1180 2058 PANTHER - 1126 1230 - -
Mtr1g1180 2058 PANTHER - 1896 2043 - -
Mtr1g1180 2058 PANTHER - 1369 1520 - -
Mtr1g1180 2058 PANTHER - 19 1107 - -
Mtr1g1180 2058 PANTHER - 1644 1751 - -
Mtr1g1180 2058 PANTHER - 1526 1613 - -
Mtr1g1180 2058 SUPERFAMILY L domain-like 462 894 - -
Mtr1g1180 2058 SUPERFAMILY RNI-like 1110 1323 - -
Mtr1g1180 2058 Gene3D Ribonuclease Inhibitor 1272 1514 IPR032675 -
Mtr1g1180 2058 Gene3D Ribonuclease Inhibitor 1664 1964 IPR032675 -
Mtr1g1180 2058 PANTHER RPP4C3 1526 1613 - -
Mtr1g1180 2058 PANTHER RPP4C3 1896 2043 - -
Mtr1g1180 2058 PANTHER RPP4C3 1126 1230 - -
Mtr1g1180 2058 PANTHER RPP4C3 1369 1520 - -
Mtr1g1180 2058 PANTHER RPP4C3 1644 1751 - -
Mtr1g1180 2058 PANTHER RPP4C3 19 1107 - -
Mtr1g1180 2058 SUPERFAMILY RNI-like 1368 1684 - -
Mtr1g1180 2058 SUPERFAMILY RNI-like 935 1090 - -
Mtr1g1180 2058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 404 IPR027417 -
Mtr1g1180 2058 Pfam NB-ARC domain 161 377 IPR002182 GO:0043531
Mtr1g1180 2058 SMART AAA_5 172 310 IPR003593 -
Mtr1g1180 2058 Gene3D Ribonuclease Inhibitor 926 1268 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1180 Mtr-Chr1 13681544 13706451 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1180 176 446 WRKY Transcription Factor Family AT5G45050 25.342 5.67e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1180 - - mtr:MTR_1g037010 3075.42