Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1178 ATGGAAATTTTAACTTCTATTGTTGGAAAAATAACAGAATATACCGTTGAGCCTATTGTACGTCAAGCAAATCACTTGATATTCTACAAAGGTAACTTCAAGAAATTAAAAGATAGTGTTGAACACCTTGAGGATACAAGAGAAAGAATAATCCATAAGGTTGAAAGTGAAACCCGAAATGGTAAAGTAATTGAAAAAGATGTTACAGATTGGTTGGTGAAAGTGGACAAGGTCATTGAAAAGGCAAAATGGCTTCAAAACGATCCTCGTCATCCCAATGTTAGGTGCTCAGCATGGTCATTCCCCAACTTGATTTTACGTCATCAACTAAGTAGGAAAGCTACAAAAATTAAAAACGATGTTGTTCAAGTTCAAAGTCAGGAGAGTTTTGATCAAATTGGCTACCTTCCCCCTCTAGATGTAGTAGCCTCATTCCCAACAAGAGATGATGAAAAGTACGACACAAGGGAGTTGCTTAAGGAAGACATTGTCCAGGCTTTAGCAGATCTTAATTCACACAACATTGGGGTCTATGGGTTGGGTAGAGTGGGGAAGACCACTCTGGTGGAGAAAGTTGCTCAAATAGCCAAGGAAAATAAATTGTTCGATAAAGTGGTTAAGGCAGAAGTATCGAAAAAACTAGACATTAGAAGAATTCAAGGGGAGATTGCAGATTTCTTGGGTCTGCGATTTGAAGAGGAGAGTAATCGTGGCAGAGCAGAACGCCTTAGACAAAGAATCAAGATGGAGAAAAGTATCCTTATCATTCTAGATAACATATGGACCATACTTGATTTGAAAGAAGTGGGGATACCAGCTGGTGATGAACATAATGGTTGCAAATTGTTGATGACAAGTAGAAATCAAGATGTGTTGCTGCAAATGGATGTTCCAAAGGATTTCACTTTCAAAGTTGAACTTATGAGTGAAAACGAGACATGGAGCTTGTTTCAATTTATGGCAGGGGATGTGGTTAAAGATAGAACTTTGAAAGATGTAGCATATCAAGTTGCCCAAAAATGTGAAGGTTTGCCTCTTAGGGTAGTGACAGTAGCGCGTGCAATGATAAATAAGAGGGATGTTGAATCTTGGAAAGATGCATTAAGGAAATTACAAAGTAATGATCATACAGAGATGGAGCCTGGAACTTATTCTGCTTTGGAATTGAGTTACAACTCATTGGAGAGTGATGAAATGAGGGATCTCTTCTTGCTTTTTGCATTAATGCTAGGTAATGATATAGAGTACTTTCTCAAAGTTGCAATGGGGTTGGACATATTGAAGCATGTTAAAGCCATGGATGATGCAAGAAACAGACTTTACTCAATAATAAAATCTTTGGAGGCGAGATGTCTTTTGCTTGAAGTTAAAACAGACAGAAATATCCAAATGCATGACTTTGTTTGTGATTTTGCTATCTCCATAACACGTAGGGATAAACATGTACTTCTAAGAGAACAATCTGATGAGGAATGGCCAACCAAGGATTTTTTTAAAAGGTGCACACAGATCTTTCTCAATGAGTGA 1527 0.3772 MEILTSIVGKITEYTVEPIVRQANHLIFYKGNFKKLKDSVEHLEDTRERIIHKVESETRNGKVIEKDVTDWLVKVDKVIEKAKWLQNDPRHPNVRCSAWSFPNLILRHQLSRKATKIKNDVVQVQSQESFDQIGYLPPLDVVASFPTRDDEKYDTRELLKEDIVQALADLNSHNIGVYGLGRVGKTTLVEKVAQIAKENKLFDKVVKAEVSKKLDIRRIQGEIADFLGLRFEEESNRGRAERLRQRIKMEKSILIILDNIWTILDLKEVGIPAGDEHNGCKLLMTSRNQDVLLQMDVPKDFTFKVELMSENETWSLFQFMAGDVVKDRTLKDVAYQVAQKCEGLPLRVVTVARAMINKRDVESWKDALRKLQSNDHTEMEPGTYSALELSYNSLESDEMRDLFLLFALMLGNDIEYFLKVAMGLDILKHVKAMDDARNRLYSIIKSLEARCLLLEVKTDRNIQMHDFVCDFAISITRRDKHVLLREQSDEEWPTKDFFKRCTQIFLNE* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1178 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 405 IPR027417 -
Mtr1g1178 508 PANTHER RPP4C3 23 508 - -
Mtr1g1178 508 Gene3D - 307 395 IPR042197 -
Mtr1g1178 508 Gene3D - 141 301 IPR027417 -
Mtr1g1178 508 SMART AAA_5 171 309 IPR003593 -
Mtr1g1178 508 Coils Coil 40 60 - -
Mtr1g1178 508 PRINTS Disease resistance protein signature 174 189 - -
Mtr1g1178 508 PRINTS Disease resistance protein signature 247 261 - -
Mtr1g1178 508 PRINTS Disease resistance protein signature 341 355 - -
Mtr1g1178 508 PANTHER - 23 508 - -
Mtr1g1178 508 Pfam NB-ARC domain 159 391 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1178 Mtr-Chr1 13633973 13645020 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1178 175 430 WRKY Transcription Factor Family AT5G45050 24.242 1.52e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1178 - - mtr:MTR_1g036860 1006.9