Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1172 ATGACGAGAATAAAAACTAGAGAAAGTGCAATACTCAAAGTTAAGATGAGTTCCAACTCCAAACAAACTCAGTTTCCCATAGAGGTAGAAAAAGTTGATGATGCTTATCTTTCTGCATTGTTACTATGTTTTAGTAGAATTTTTCCTGCAATACTAAATGCTGCTATTGATCTCAATTTATTTGATATCATAGCTAAGTTACAAAATTCAAGTGAACATTCTAGTTTTTCTGCTTCTGAAATTGCTTCTGAGCTTCCAAATCAACACCCTGAATTGGCTGAGAGGCTTGAACGTATGTTGACTGTGTTGGCTAGTTACTCTCTTCTCACTTGTTCCATTCGTACCAATGAAGATGGTAACAAAGAAAGAGTTTATGCTCTCTCATCAATTGGTCAATACTTTGCATTGGATAAAGATGGAGGCTCTTTACGTCCACTCTCAGCATTAATCCATCGTGGATATCATCATGTTTGGTATGATGTAAAAGATGCGATCATAAACCCTAACAACAATGACCATTTTCATAAAGTTCATGGATCACCGGCTTATAAATATTTGGAGAAAAATCAAGAGCTAAATCAAATTTTTAACAAAGCAATGGCTCAATCTGGTCCATTAGAAATGAAAAGGATTCTTACACTATATAAAGGATTTGAGGAAGTCTCAACACTGGTTGATGTAGGTGGTGGAGTAGGGAATGCTTTGAAACAGATTATATCTGAATATCCTTCAATAAAAGGCATTAATTTTGATTTACCCCAAGTGGTTCAAGATGCACCAACTCATCCAGGGATAGAGCATGTTGAAGGAAATATGTTTGAAAGTGTTCCAGGTGGTGATGCCATCTTACTAAAGCTTGTATGTCACAATTGGGCAAATGAAGAATGTGTAAAGTTTTTAAGAAATTGTCACAAAGCTTTACCAAAACATGGAAAGGTGATTGTTTTGGATTATATAATTCCAGAGGTTCCAAACCCAAGCAAAATCTCTAAGCATGCTTGTGCTATTGACAATCTCATGTTTTTAGTACATGGTGGAAAGGAAAGAACTGAAAACGAATTTCAAAACTTATGCATGAGCTCTGGATTTTCCAAATTTCATATTGCTTGCAGTGATACCTCAGCTATGTCTGGAGTAATGGAATTCTATAAATAA 1155 0.3532 MTRIKTRESAILKVKMSSNSKQTQFPIEVEKVDDAYLSALLLCFSRIFPAILNAAIDLNLFDIIAKLQNSSEHSSFSASEIASELPNQHPELAERLERMLTVLASYSLLTCSIRTNEDGNKERVYALSSIGQYFALDKDGGSLRPLSALIHRGYHHVWYDVKDAIINPNNNDHFHKVHGSPAYKYLEKNQELNQIFNKAMAQSGPLEMKRILTLYKGFEEVSTLVDVGGGVGNALKQIISEYPSIKGINFDLPQVVQDAPTHPGIEHVEGNMFESVPGGDAILLKLVCHNWANEECVKFLRNCHKALPKHGKVIVLDYIIPEVPNPSKISKHACAIDNLMFLVHGGKERTENEFQNLCMSSGFSKFHIACSDTSAMSGVMEFYK* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1172 384 Pfam Dimerisation domain 51 104 IPR012967 GO:0046983
Mtr1g1172 384 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 40 384 IPR016461 GO:0008168
Mtr1g1172 384 SUPERFAMILY "Winged helix" DNA-binding domain 32 137 IPR036390 -
Mtr1g1172 384 Gene3D - 17 134 IPR036388 -
Mtr1g1172 384 Gene3D Vaccinia Virus protein VP39 137 384 IPR029063 -
Mtr1g1172 384 CDD AdoMet_MTases 223 320 - -
Mtr1g1172 384 PIRSF O-mtase 15 384 IPR016461 GO:0008168
Mtr1g1172 384 Pfam O-methyltransferase domain 158 364 IPR001077 GO:0008171
Mtr1g1172 384 PANTHER O-METHYLTRANSFERASE 16 384 IPR016461 GO:0008168
Mtr1g1172 384 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 16 384 - -
Mtr1g1172 384 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 151 372 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1172 Mtr-Chr1 13440477 13442567 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1172 16 370 Monolignol Biosynthesis Gene Families AT5G54160 43.855 1.33e-104 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1172 - - aprc:113869089 560.836