Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1170 ATGAGTTCCAATACTAAACAAAATAATCTTGCTACTAATGAGGTAGAAAAAGTTGATGATGCTTATCTTTCTGCATTGTTATTATGTTTTAGTAGGGTTTTTCCTGCTATACTAAATGCTGCTGTTGATCTCAATTTATTTGAAATCATAGCTAAGTTACAAAATTCAAATGAACATTCTAGTTTTTCTGCTTATGAAATTGCTTCTGAGCTTCCAAATCAACACCCTGAATTGGCTGAGAGGCTTGAACGTATGTTGACTGTGTTGGCTAGTTACTCTCTTCTCACTTGTTCCATTCGTACCAATGAAGATGGTAAGAGAGAAAGAGTTTATGCTCTCTCATCAATTGGTCAATACTTTGCATGTGATAGTGATGGAGGCTCTTTGGCTCCACTCTCAACATTAATCCATAGAGGGTGTAATAGCGTTTGGGGTGATGCAAAGGATGCAATTTTGGATCCTGATGTCAAAAATATTTTCCAAAGTATCAATGGGACATCATTTTATCAATACACCAAGACAAACAAAGAATTGAATGATACTTGTAACAAAGCAATGGCTCATTCTGGTCCATTGGAAATTAAAAGGATCCTTCAATTTTATAAAGGATTTGAAGGAGTCTCAACGTTGGTTGATGTTGGAGGTGGAGTAGGAAAGACCCTAAAACTCATTATCTCTCAATATCCTTCAATTAAGGGAATTAATTTTGATATGCCACAAGTTGTTCAAAATGCACCTTCTCATCCAGGGCTGGAGCATGTTGGAGGAGATATGTTTGAAAGTGTTCCAACTGGTGATGCAATTGTACTAAAGCTTGTATGTCATAACTGGGCAGATGAAGAATGTGTGAAGTTCTTAAAAAATTGTCACAAAGCTTTACCAAAACATGGAAAGGTGATTGTTTTGGATTATATAATTCCAGAGGTGCCAAACCCTAGCAATATGTCTAAGCATGCTTGTGCTATTGACAATCTCATGTTTTTAGTAACAACTGGAAAGGAAAGAACTGAAGAAGAATTTGAGAGCTTATGTAAGAGAGCTGGATTTTCCAAATTTCATGTGGCTTGCAGTGATGCCTCGGCCTTGTCAGGAGTGATGGAATTTTATAAATAA 1113 0.3639 MSSNTKQNNLATNEVEKVDDAYLSALLLCFSRVFPAILNAAVDLNLFEIIAKLQNSNEHSSFSAYEIASELPNQHPELAERLERMLTVLASYSLLTCSIRTNEDGKRERVYALSSIGQYFACDSDGGSLAPLSTLIHRGCNSVWGDAKDAILDPDVKNIFQSINGTSFYQYTKTNKELNDTCNKAMAHSGPLEIKRILQFYKGFEGVSTLVDVGGGVGKTLKLIISQYPSIKGINFDMPQVVQNAPSHPGLEHVGGDMFESVPTGDAIVLKLVCHNWADEECVKFLKNCHKALPKHGKVIVLDYIIPEVPNPSNMSKHACAIDNLMFLVTTGKERTEEEFESLCKRAGFSKFHVACSDASALSGVMEFYK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1170 370 Pfam Dimerisation domain 37 90 IPR012967 GO:0046983
Mtr1g1170 370 Gene3D Vaccinia Virus protein VP39 179 357 IPR029063 -
Mtr1g1170 370 PANTHER O-METHYLTRANSFERASE 1 370 IPR016461 GO:0008168
Mtr1g1170 370 PIRSF O-mtase 2 370 IPR016461 GO:0008168
Mtr1g1170 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 370 IPR016461 GO:0008168
Mtr1g1170 370 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 370 - -
Mtr1g1170 370 Pfam O-methyltransferase domain 144 350 IPR001077 GO:0008171
Mtr1g1170 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 141 359 IPR029063 -
Mtr1g1170 370 CDD AdoMet_MTases 209 306 - -
Mtr1g1170 370 Gene3D - 33 197 IPR036388 -
Mtr1g1170 370 SUPERFAMILY "Winged helix" DNA-binding domain 18 124 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1170 Mtr-Chr1 13416468 13420025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1170 19 356 Monolignol Biosynthesis Gene Families AT5G54160 46.471 1.54e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1170 - - aprc:113869089 528.094