Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1166 ATGAGTGAGGTCCCCTCAGAATTGAGACTTCGTTATGTTCCCTTGATTGATCTTGAGGATAGTGATGATGATGTCATTGAATCTTCACCAAGATCTTTTGCTCAGGCGAGCGCAAGGAGAAATCGAAGAAGGATGAGAACTGGCTCGAATTTGGGAAGTCAAACTATACCAACTTATGCTATGCACACTAGAGAGCAACGCATATTCGAACCAATTGGTGATGTTTATATAAATTTGGAAGTTAATACTGGTGGGGAGGCTAAGAATGCCAAAAATTCAGTTGAAACTAAGAAAGAAGCCTACAAGCCTAGGATTGAAGAACCTGAACCTCCAGAGGAGCCTAGGTGCCCAATATGTATGGATCCTTTTGTGGAGGAAATGACAACAAGGTGTGGACATATTTTTTGCAAGAATTGCATAAAAAATGTAATAAGAATACAAGGGAAATGCCCTACTTGTAGGAAAAAGGTCACTTCAAGACAGCTAATAAAGGTGTTTCTTCCATCTTTTGGTTGA 516 0.3992 MSEVPSELRLRYVPLIDLEDSDDDVIESSPRSFAQASARRNRRRMRTGSNLGSQTIPTYAMHTREQRIFEPIGDVYINLEVNTGGEAKNAKNSVETKKEAYKPRIEEPEPPEEPRCPICMDPFVEEMTTRCGHIFCKNCIKNVIRIQGKCPTCRKKVTSRQLIKVFLPSFG* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1166 171 SUPERFAMILY RING/U-box 102 159 - -
Mtr1g1166 171 MobiDBLite consensus disorder prediction 87 112 - -
Mtr1g1166 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 169 IPR013083 -
Mtr1g1166 171 ProSitePatterns Zinc finger RING-type signature. 131 140 IPR017907 -
Mtr1g1166 171 Pfam Zinc finger, C3HC4 type (RING finger) 115 153 - -
Mtr1g1166 171 SMART ring_2 116 153 IPR001841 -
Mtr1g1166 171 MobiDBLite consensus disorder prediction 24 54 - -
Mtr1g1166 171 MobiDBLite consensus disorder prediction 91 112 - -
Mtr1g1166 171 ProSiteProfiles Zinc finger RING-type profile. 116 154 IPR001841 -
Mtr1g1166 171 PANTHER ELFLESS, ISOFORM B 15 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1166 Mtr-Chr1 13324062 13328717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1166 15 169 C3H Transcription Factor Family AT5G48655 42.308 1.08e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1166 K22651 - gmx:100778432 129.798