Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1141 ATGTCATTTTATCACCCTAAAAAGTTCTTCAAGATAATGCGAAATCAAGAACTGCAAAATGGAGAGCTTAGGGTTCCCAAATATTTTGTGAAGCTACATTGGAAAAATGTATCAAATCCAGTAGCCTTTACTCTCCCAAATGGCTCTAAACAAGATGTATTTTGGGTGGAGCATAATGGTGATATTTGGTTTCAAAAAAATTGGGAAACAATTGCGAAATCTCTTATACGTGGACATGTTCTAGTTTTTAAATATAAAGGAGGATCATGTTTCAAAGTTGAAATATTTGGTTGCAATACATTGGAATTAGACTATTCCAATATAAAAGTTGAAGCTGAAGAAGTAGTTGTAGTGAGTAATGACAATGTTACTAATACTAATGGAGCTGGTACATCTCAAAGGAGAAAAGGTGGCAAGAGAAAAATGAATATGGATCTTGATGCTAATCAGAAAAAAATCAAAGGTAGTAATAGAGGAGGCATGATCAAGAAGGCTAAGAAATGCCTAAGAACTGAAGCTGTTAAAGAGAGAGTAAGAAATTATCATCCTTTGGAAAATCCCAGTTTTGAAGTTGAAATGTCACAATCTTATGCCAAAGGATGTTATTTGAGGATACCAAGGGATTTTTCGAGAAAATACTTGACAAAGTTGGAAGGGACCGCAAGATTTAGAGTTGGTGAAGACATGGCTATAGAAGTGAAGTTGAATTTTTATGATGTCACTAAATCATCTACTGTGACCACTGGTTGGAACACATTTAGCAAAAGATATAATTTGCAACTTGGTGATGTTTGTAAATTTGTGATGACTCAAAGAGAACCACTTTTATTCACTATTATCATTACTCGAGCAAGAGAGGAACCTAACTCTAAGAAGTTGAAAATGCAAGGTTATAAAGAAGGGATCTCTTGTAGTGATAACGATGCAAAGAGAAAAGACATTAAAGGAACTTCCAGTTCTAGGAGCTGCCCAAAAATACATCTACTCGGATTCAGAAGGTCATAA 1005 0.3473 MSFYHPKKFFKIMRNQELQNGELRVPKYFVKLHWKNVSNPVAFTLPNGSKQDVFWVEHNGDIWFQKNWETIAKSLIRGHVLVFKYKGGSCFKVEIFGCNTLELDYSNIKVEAEEVVVVSNDNVTNTNGAGTSQRRKGGKRKMNMDLDANQKKIKGSNRGGMIKKAKKCLRTEAVKERVRNYHPLENPSFEVEMSQSYAKGCYLRIPRDFSRKYLTKLEGTARFRVGEDMAIEVKLNFYDVTKSSTVTTGWNTFSKRYNLQLGDVCKFVMTQREPLLFTIIITRAREEPNSKKLKMQGYKEGISCSDNDAKRKDIKGTSSSRSCPKIHLLGFRRS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1141 334 MobiDBLite consensus disorder prediction 302 321 - -
Mtr1g1141 334 SUPERFAMILY DNA-binding pseudobarrel domain 184 283 IPR015300 -
Mtr1g1141 334 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 284 - -
Mtr1g1141 334 SMART B3_2 189 283 IPR003340 GO:0003677
Mtr1g1141 334 SMART B3_2 9 99 IPR003340 GO:0003677
Mtr1g1141 334 Pfam B3 DNA binding domain 191 278 IPR003340 GO:0003677
Mtr1g1141 334 MobiDBLite consensus disorder prediction 304 318 - -
Mtr1g1141 334 CDD B3_DNA 187 283 IPR003340 GO:0003677
Mtr1g1141 334 CDD B3_DNA 7 96 IPR003340 GO:0003677
Mtr1g1141 334 Gene3D - 4 100 IPR015300 -
Mtr1g1141 334 PANTHER B3 DOMAIN-CONTAINING 7 284 - -
Mtr1g1141 334 ProSiteProfiles B3 DNA-binding domain profile. 188 285 IPR003340 GO:0003677
Mtr1g1141 334 SUPERFAMILY DNA-binding pseudobarrel domain 7 99 IPR015300 -
Mtr1g1141 334 Gene3D - 169 287 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1141 Mtr-Chr1 12983950 12985931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1141 6 286 B3 DNA Binding Superfamily AT3G18990 25.439 5.95e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1141 B3 5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1141 - - mtr:MTR_1g035650 407.527