Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1140 ATGGCTGAACAAGAGCTTAGAGTAAGGAGGATTGAAGATTGGAAACAAAGAGGAATAATTTGGAGATCAGGGTTTCAAGAATCGGGGATTCGTTTTGGAAGTTTCTTGGCCATTGGAACTGTTAGAGGATTCCCAAGAAGTGGATCATATTTCAAGGTTAAGATATTTGGTGCCAATACTTTGGAAATAAACTATTCCAATATAAAATCTGTTGAAGAAGTTGTTGAAGCTAAAGAAGGAGTTGAAGTGAGTGGTGATAGTGATAAGAGTTTAGGTGAAGGTGAAATACCCCTTCAAGCTCAAAGGACAATAAAAAATGGCAAGAGAAAAAATAGTGTGGATTTGTATACTACCCAGCCAATATTCTCAGATGGGGACAGAGGAGACATGACTAAGAAGGCTAAAAATTGCTCATCAATTGAAGTTCTTAATGAGAGTGACAATAATGAGAATCCCTTTTTTAATGTTACATTGCCACAATCTTATGCCCATGGCTGCAGGATGGCGATACCAAGTAATTTTTCAAGAGCACACTTGAACAAATTTAAAGGGATTGCAAATTTAAGAGTTGGTGAGGACAAGACTATGGAAGTGAATGTGAACTTTGAAGATAATAATAGAAGATCTGTTTTGACTACTGGTTGGAAATCATTTAACCAAAAATATAACTTAGAAGTTGGTGATAAATGTAAATTTGTGATGACTCAAAGAGAACCACTATTATTTACTGTTACTATTACTCCATCAAGGGAGCAATCAATTTCAAAGAAATTAAAATCTCAAGGTTATAAAGAAGGGACCTCTTCTTGTGGTGATAATCCAAAGAGAAAAGTATTTAAAGGAACTTCTAGGAGCTGCCAAACAAATCATCTTCTTGGAAGTAAGGACAGTGGAGGCATGATTAAGAAAGCTAAAAATTGCTCACCGGTTGAAGTTGTTAATGAGAGTGACAATAATGAGAATCCCTTTTTTTATGTTACATTGTCAAAATCTTACGTCCATGGCAGCAATATGTTGGTGATACCATGTAATTTTTCAAGAGCACACTTGAACAAATTTAAAGGGATTGCAAATTTAAGAGTTGGTGAGGACAAGACTATGGAAGTGAATGTGACGTTTGAAGAAGCCAAAAGAAGATCTCTTGTGACTACTGGTTGGAAATCATTTAACCAAAAATATAACTTACAGGTTGGTGATGAATGTAAATTTGTGATGACTCAAAGAGAACCACTTTCATTCACCGTTACTATTACTCCATCAAGGGAGCAATCAAGCTCAAAGAAATTAAAATCTCAAGGTTATAAAGAAGGGACCTCTTCTTGTGGTGATAATTCAAAGAGAAAAGAATTTAAAGGAACTTCTAGGAGCTGCCCAACAAATCATCTTGAAAATTCAGAAGGTGATAATGTGAAGAAACCTAAAACATTCAAGATTGATGTGTATTCCAAATACTCGAATGTTCCAAAGGAGTTTATGAAAAGAGGAAGTCATGAAAACTTTCTGGAGTTGAAAATGGGGGGACGATCATGGTCTGTAAAAGTGAATTATTATGATAGTATTCATGGTTATAGATTCTCTGGAGGTTGGAGACAATTCATAAAAGAATGCAAAGTGGAGATTGGAGATACTCTTCTCTTTAAGTTGATTGATGAGAGCAAGTTTGTGTTTGATGTTTCAATTGTAGGAAAAAATCCCTTAGCTGCTTGTTCTATTGTTCTTTAA 1722 0.3513 MAEQELRVRRIEDWKQRGIIWRSGFQESGIRFGSFLAIGTVRGFPRSGSYFKVKIFGANTLEINYSNIKSVEEVVEAKEGVEVSGDSDKSLGEGEIPLQAQRTIKNGKRKNSVDLYTTQPIFSDGDRGDMTKKAKNCSSIEVLNESDNNENPFFNVTLPQSYAHGCRMAIPSNFSRAHLNKFKGIANLRVGEDKTMEVNVNFEDNNRRSVLTTGWKSFNQKYNLEVGDKCKFVMTQREPLLFTVTITPSREQSISKKLKSQGYKEGTSSCGDNPKRKVFKGTSRSCQTNHLLGSKDSGGMIKKAKNCSPVEVVNESDNNENPFFYVTLSKSYVHGSNMLVIPCNFSRAHLNKFKGIANLRVGEDKTMEVNVTFEEAKRRSLVTTGWKSFNQKYNLQVGDECKFVMTQREPLSFTVTITPSREQSSSKKLKSQGYKEGTSSCGDNSKRKEFKGTSRSCPTNHLENSEGDNVKKPKTFKIDVYSKYSNVPKEFMKRGSHENFLELKMGGRSWSVKVNYYDSIHGYRFSGGWRQFIKECKVEIGDTLLFKLIDESKFVFDVSIVGKNPLAACSIVL* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1140 573 SUPERFAMILY DNA-binding pseudobarrel domain 147 246 IPR015300 -
Mtr1g1140 573 SMART B3_2 153 250 IPR003340 GO:0003677
Mtr1g1140 573 SMART B3_2 324 421 IPR003340 GO:0003677
Mtr1g1140 573 SMART B3_2 475 564 IPR003340 GO:0003677
Mtr1g1140 573 ProSiteProfiles B3 DNA-binding domain profile. 153 250 IPR003340 GO:0003677
Mtr1g1140 573 SUPERFAMILY DNA-binding pseudobarrel domain 486 558 IPR015300 -
Mtr1g1140 573 SUPERFAMILY DNA-binding pseudobarrel domain 317 417 IPR015300 -
Mtr1g1140 573 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 48 247 - -
Mtr1g1140 573 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 429 561 - -
Mtr1g1140 573 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 262 418 - -
Mtr1g1140 573 CDD B3_DNA 322 417 IPR003340 GO:0003677
Mtr1g1140 573 Pfam B3 DNA binding domain 487 560 IPR003340 GO:0003677
Mtr1g1140 573 Pfam B3 DNA binding domain 153 245 IPR003340 GO:0003677
Mtr1g1140 573 Pfam B3 DNA binding domain 324 417 IPR003340 GO:0003677
Mtr1g1140 573 PANTHER B3 DOMAIN-CONTAINING 262 418 - -
Mtr1g1140 573 PANTHER B3 DOMAIN-CONTAINING 48 247 - -
Mtr1g1140 573 PANTHER B3 DOMAIN-CONTAINING 429 561 - -
Mtr1g1140 573 MobiDBLite consensus disorder prediction 418 440 - -
Mtr1g1140 573 CDD B3_DNA 473 560 IPR003340 GO:0003677
Mtr1g1140 573 CDD B3_DNA 153 246 IPR003340 GO:0003677
Mtr1g1140 573 MobiDBLite consensus disorder prediction 418 468 - -
Mtr1g1140 573 ProSiteProfiles B3 DNA-binding domain profile. 324 421 IPR003340 GO:0003677
Mtr1g1140 573 Gene3D - 459 564 IPR015300 -
Mtr1g1140 573 Gene3D - 302 422 IPR015300 -
Mtr1g1140 573 Gene3D - 131 251 IPR015300 -
Mtr1g1140 573 ProSiteProfiles B3 DNA-binding domain profile. 487 564 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1140 Mtr-Chr1 12969707 12975229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1140 339 553 REM Transcription Factor Family AT4G31690 28.571 1.53e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1140 B3 4.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1140 - - mtr:MTR_1g035490 254.603