Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1139 ATGTCATTACATCATCCAGAAGAGTTCTTGAAGATAGTTCAAAATCATGAACTGCATAAGGGAGAGCTTAGGGTTCCCAAGAAATTTGTGGAGAAATATTGGAAAAGAATACCAAATCCAGTAATTCTTAGACTCCCAAATGGTGCTCAAAAGAAAATATTTTGGGTGGAGCGTGACGGTAATATTTGGTTGAAGAGAAATTGGGAAAATTTTGCAAAGTCTCTAAAACGTGGATATGCTTTAGTTTTCAAATATATAGGGGGCCCATATTTTAAGGTTAAGATATTTGGTCACAACACATTGGAAAAAGACTATTCCAATATAAAATTCATTGATGAAAGCTGTGAAGGTAGAGAAGAAGTTCAAGAAGTTGTTGAACTGAGTGATGACAATGTTAATAGTGCTGGCACATCTCAAAGGAGAAAAAGTGGCAAGAGAAAAATTAATCAGCAAAAAATCAAAGGTAGTAAGAGAGGTATGATTAAGAAGACTAAAAAATGCTCAACAATTAGTGAGAGAGACAATAATGAGAATCCAAGTTTTGAACTTGATTTGTCACAATCTTACGCCCATGGCTATACTTTGAGGATACCAAGTGACTTTTCAAGAACATATTTGAATGAGAACCTTAAAGGGTCATCTGCAAGCATTAGGTTTGGTGAGAACATGCCTATGAAAGTGAAGGTGATGTTTCAAGATGTCAAGTATAATAGAACATGTTTTGTGACCAATGGTTGGAAGCCATTTGCCAAAAAATATAACCTACAAGTTGGCAATGTATGTAAATTTGTGATGACTCAACTTCATCCACTTTCATTCACCATAACTATTACCCAAGCCAAAGGTTATGAAGGAATAATCTCTTGTGATGATAATATTGGGAAGAAAAGAGGCATTGAAGGAAGTTCAAGGAGCTGCCATGTTCTCCCAAAACAAGTTTTGTTTTGA 948 0.3523 MSLHHPEEFLKIVQNHELHKGELRVPKKFVEKYWKRIPNPVILRLPNGAQKKIFWVERDGNIWLKRNWENFAKSLKRGYALVFKYIGGPYFKVKIFGHNTLEKDYSNIKFIDESCEGREEVQEVVELSDDNVNSAGTSQRRKSGKRKINQQKIKGSKRGMIKKTKKCSTISERDNNENPSFELDLSQSYAHGYTLRIPSDFSRTYLNENLKGSSASIRFGENMPMKVKVMFQDVKYNRTCFVTNGWKPFAKKYNLQVGNVCKFVMTQLHPLSFTITITQAKGYEGIISCDDNIGKKRGIEGSSRSCHVLPKQVLF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1139 315 PANTHER B3 DOMAIN-CONTAINING 5 279 - -
Mtr1g1139 315 SUPERFAMILY DNA-binding pseudobarrel domain 8 99 IPR015300 -
Mtr1g1139 315 CDD B3_DNA 9 96 IPR003340 GO:0003677
Mtr1g1139 315 MobiDBLite consensus disorder prediction 131 155 - -
Mtr1g1139 315 MobiDBLite consensus disorder prediction 140 155 - -
Mtr1g1139 315 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 279 - -
Mtr1g1139 315 ProSiteProfiles B3 DNA-binding domain profile. 180 281 IPR003340 GO:0003677
Mtr1g1139 315 Gene3D - 2 100 IPR015300 -
Mtr1g1139 315 Gene3D - 160 283 IPR015300 -
Mtr1g1139 315 SUPERFAMILY DNA-binding pseudobarrel domain 176 277 IPR015300 -
Mtr1g1139 315 SMART B3_2 181 281 IPR003340 GO:0003677
Mtr1g1139 315 SMART B3_2 9 99 IPR003340 GO:0003677
Mtr1g1139 315 CDD B3_DNA 179 277 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1139 Mtr-Chr1 12959518 12961095 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1139 9 132 B3 DNA Binding Superfamily AT3G18990 27.778 2.64e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1139 - - mtr:MTR_1g035620 641.343