Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1138 ATGTCTTCTCAAGAGAGTAATGGTGTCCACTTTTTTAAGGTTATACGTCAAAGTACCCTTCAAGAAGAAAAGCTGAGTGTGCCCATAAGTTTTGTGAAAAGGTATTGGAAAGGAATAAGAAACCCAGTTACTTTAAGGTTTCCAAACATGGTGGAAAAGAAAGTTTCTTGGGAGAAAACTAGTGAAAATGAAGTTATGTTTTGCAATGGTTGGAAAGAACTTGCAAATTATTTGTCTTTGAATGAATCACAATTTTTGGTGTTTCAATATCAAGAAAATTCTGTCTTTAATGTGATTGTATTCGGTAGATGCGGATTAGAAATAAAATACCCGTCAAGAGAAACTAGGGAAGAATCTGAAGAGAGTGATAGTTCTTTGAAAATTATTGAGAATCCTTCGTCGTCATGGGGTAAAAGGCTAAAATCTCCAGCACCATCTATGGAAGTTTGTAAGAAGATGAAAATCAACTCAAAAGAACAAAAAGATTCTAAGCTTGATGTGAACAATGCAGGAAGTAGCTGTGATGATATTAAGGAGAGAAGTAGAATTTTGTGCCAGAAAGTGAAGAAATTTTTTGTCTCTAATAACGACTTTTTTGCATGTATGATGCTAAAGACATACATTGATAGAGATCTCTTGGTCATACCAAATGAATTTGTTAAGGCACATATGGACATGATGGAAGGAAGAGATGATGCTACACTTTTTGTTGACCAAGATAAATGGAATGTGAAGCTCACTTTAAATAAACAATCTGCACTAACTTGTGGTTGGAGAGAATTCCGTGAAGAGAATAATTTGAAATTTGGTGATGTTTGTGTTTTTGTGCTAAACAAAGGCAAAGAAACAGTTTCATTTCAAGTTGTTATTTTCTCTTTGGAAAAGGACATGAAAACTCCTTATTTTGAAGGGTTGGCTTGA 921 0.342 MSSQESNGVHFFKVIRQSTLQEEKLSVPISFVKRYWKGIRNPVTLRFPNMVEKKVSWEKTSENEVMFCNGWKELANYLSLNESQFLVFQYQENSVFNVIVFGRCGLEIKYPSRETREESEESDSSLKIIENPSSSWGKRLKSPAPSMEVCKKMKINSKEQKDSKLDVNNAGSSCDDIKERSRILCQKVKKFFVSNNDFFACMMLKTYIDRDLLVIPNEFVKAHMDMMEGRDDATLFVDQDKWNVKLTLNKQSALTCGWREFREENNLKFGDVCVFVLNKGKETVSFQVVIFSLEKDMKTPYFEGLA* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1138 306 Pfam B3 DNA binding domain 11 99 IPR003340 GO:0003677
Mtr1g1138 306 Pfam B3 DNA binding domain 198 291 IPR003340 GO:0003677
Mtr1g1138 306 CDD B3_DNA 10 101 IPR003340 GO:0003677
Mtr1g1138 306 SUPERFAMILY DNA-binding pseudobarrel domain 194 292 IPR015300 -
Mtr1g1138 306 Gene3D - 2 104 IPR015300 -
Mtr1g1138 306 PANTHER B3 DOMAIN-CONTAINING 4 292 - -
Mtr1g1138 306 CDD B3_DNA 198 292 IPR003340 GO:0003677
Mtr1g1138 306 ProSiteProfiles B3 DNA-binding domain profile. 10 104 IPR003340 GO:0003677
Mtr1g1138 306 SMART B3_2 198 294 IPR003340 GO:0003677
Mtr1g1138 306 SMART B3_2 11 107 IPR003340 GO:0003677
Mtr1g1138 306 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 292 - -
Mtr1g1138 306 SUPERFAMILY DNA-binding pseudobarrel domain 5 103 IPR015300 -
Mtr1g1138 306 Gene3D - 177 295 IPR015300 -
Mtr1g1138 306 ProSiteProfiles B3 DNA-binding domain profile. 198 294 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1138 Mtr-Chr1 12947740 12949450 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1138 11 284 B3 DNA Binding Superfamily AT3G18990 24.316 1.22e-21 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1138 B3 8.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1138 - - mtr:MTR_4g119990 371.318