Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1136 ATGGCGGTGTTGTTGCTCCGATTGCAGTTCAGCAAGCGCGGCAGGAATTCGAGGGTTCCTAAGATATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAATGGTGTTCAACAAGAAATATTTTGGGCGGAGAGTAATGGTGACATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGTTTCTGAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAATTATGCAAATATCAAATCCGTTGATGAAGGTGCTGAAGACACAGAAGAAGGTATAGAAAGTGATGAATCAAGTGATGATGAAGACAATGAAGAAAGTGATGAAGTCAGTGATGAGAGTTCAGATGAGGTTGAAATACCAAAGCAAGCTCAAAGGACTAGAAATGGCAAGAGAAAATTCTCAGGTAGTAACAAAGTATCCATGGTGAAGAAGGCTAAAAAATACCCAATGGCACAATCTGAAGCTGTTAATGAGAGAGCCAATAATGAGAATCCTTTTTTTGAAGTTACAATGTCCCATACTTACACCAATGGCTATTTGTTGTGGTTACCACGTGAGTTTTCAAGAGAACACTTGGAAAATTTTAATGGAACTGCAACAATAAGGGTTGGTAAAGAAAGGAGTGTGGAAGTGAGTTTGAGGTATTATGATACCAAAGAAAAATCTTGTTTGGGTGGTGGTTGGAAAATATTCAGGGAAAAGTATAATTTGCAAGTTGACGATGTTTGTAAATTTGAGATGATTCAACGGAGACCGTTTTTATTCACTGTTACTATTACTCGTGCTGGAAAGGAACCAATCCCAAAGAAATTACTAGAAGGTCCTGATGTGATGAAGCCATATACATTCAAGGTTTTGGTGAAGAACACAGCTCCGAGTGTACCAAAGGAGTTTATGAAAAGAGGATGTCATGAAAATATTGTGGAGTTGAAAATGGGGAGAAAGTCATGGTTCGTAAAAGTGAACTATTACGAGAGTATTTGTGGCTGTAGGTTCAGTAAAGGTTGGAGAAAGTTCATGAAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCCTTAAGTTGATTGATGAACGAAAATTTGTGTTTGATGTTTCAATTGCAGGAAAGAATCCATTAGCTGTTTGTTCTCCAAGGTACTAA 1215 0.3654 MAVLLLRLQFSKRGRNSRVPKIYVEKYWKGISNPIFLKFPNGVQQEIFWAESNGDIWFQKNWESFAKFLKYGYLLTFKFIGGSYFKVKIFGANTLEINYANIKSVDEGAEDTEEGIESDESSDDEDNEESDEVSDESSDEVEIPKQAQRTRNGKRKFSGSNKVSMVKKAKKYPMAQSEAVNERANNENPFFEVTMSHTYTNGYLLWLPREFSREHLENFNGTATIRVGKERSVEVSLRYYDTKEKSCLGGGWKIFREKYNLQVDDVCKFEMIQRRPFLFTVTITRAGKEPIPKKLLEGPDVMKPYTFKVLVKNTAPSVPKEFMKRGCHENIVELKMGRKSWFVKVNYYESICGCRFSKGWRKFMKECKVEIGDTCLLKLIDERKFVFDVSIAGKNPLAVCSPRY* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1136 404 CDD B3_DNA 189 285 IPR003340 GO:0003677
Mtr1g1136 404 Pfam B3 DNA binding domain 316 389 IPR003340 GO:0003677
Mtr1g1136 404 Pfam B3 DNA binding domain 190 285 IPR003340 GO:0003677
Mtr1g1136 404 SUPERFAMILY DNA-binding pseudobarrel domain 304 390 IPR015300 -
Mtr1g1136 404 SUPERFAMILY DNA-binding pseudobarrel domain 16 93 IPR015300 -
Mtr1g1136 404 CDD B3_DNA 304 391 IPR003340 GO:0003677
Mtr1g1136 404 Gene3D - 5 94 IPR015300 -
Mtr1g1136 404 ProSiteProfiles B3 DNA-binding domain profile. 190 287 IPR003340 GO:0003677
Mtr1g1136 404 Gene3D - 167 288 IPR015300 -
Mtr1g1136 404 Gene3D - 300 395 IPR015300 -
Mtr1g1136 404 MobiDBLite consensus disorder prediction 108 167 - -
Mtr1g1136 404 ProSiteProfiles B3 DNA-binding domain profile. 301 395 IPR003340 GO:0003677
Mtr1g1136 404 MobiDBLite consensus disorder prediction 110 138 - -
Mtr1g1136 404 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 286 - -
Mtr1g1136 404 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 313 392 - -
Mtr1g1136 404 SUPERFAMILY DNA-binding pseudobarrel domain 185 286 IPR015300 -
Mtr1g1136 404 SMART B3_2 306 395 IPR003340 GO:0003677
Mtr1g1136 404 SMART B3_2 1 93 IPR003340 GO:0003677
Mtr1g1136 404 SMART B3_2 190 287 IPR003340 GO:0003677
Mtr1g1136 404 PANTHER B3 DOMAIN-CONTAINING 13 286 - -
Mtr1g1136 404 PANTHER B3 DOMAIN-CONTAINING 313 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1136 Mtr-Chr1 12934774 12938998 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1136 18 285 B3 DNA Binding Superfamily AT3G18990 25.312 7.95e-18 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1136 B3 5.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1136 - - mtr:MTR_1g035570 748.043