Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1135 ATGTTAGTTCAACATGTTCCAGATTTTCATAGGATAATCTTGCAAGATAAGAAACTTAGGGTTCCAAAGAAATATGTGGACAAATATTTGAAAGGAATATCAAACCCTATATTCCTTATATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGAAGAGTAATGGTGATATTTGGTTTCAAAAAAACTGGGAAAGTTTTGCAAAGCCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAGCTATTCCAATATCAAATCAGTTGATGAAGGTGCTGAAGACACAAAAGAAGCTCAAGAAAGTGATGAGGAAGCCACTGAAGAAGGTGAAGAAAGTGATGAAAGTGATGAAGAGAGTGATAAGGTTGAAATGCCAAAGAAAGCTCAAAGGACAATAAATGACAAGAGAAAATTCTCAGGTAGTAACAAAGTAGCCATGGTGAAGAAGGCTAGAAAATACCAAACATCTGAAGCTGTTAATGAGAATCCCTCTTTTGTAGTTATAATGACACAGTCTTACACCAATGGCTATTTCTTGTGGTTACCATGTGAGTTTTCAAGAGAACACTTGATAGATTTTAATGGAACTGCAACAATAAGGGTTGATAATGAAAGGAGTGTGGAAGTGAGTTTGAGGTATTATGGTAACAAAGAAAGATCTTGTTTGGGTGGTGGTTGGAAAATATTCAGGGAAAAATATAATTTGCAAGTTGACGATGTTTGTAAATTTGAGATGATTCGACGGAGACCTTTTTCATTCATTGTCACTATTACTCGTGCCGGAAACGAAGCAATCCCAAAGAAACTACTAGAAGGTCCTAATGTGATGAAGCATAACACATTTAAGGTTTTGGTGAAGAACACATCCCCGGGTGTGCCAAAGGAGTTTATGAAAAGAGGATGTAATGAAAATATTGTGGAGTTAAAAATGGGGAGAAAGTCATGGTTTGTAAAAGTCAATTATTATGAGAGTATTCATGGCTGCAGATTCAGTAAGGGATGGACAAAATTTATGAAAGCATGCAAAGTGAAGATTGGAGACACTTGTCTCTTTAGGTTAATTGATGAAAGGAAATTTGTGTTTGATGTTTCAATTTGA 1155 0.3472 MLVQHVPDFHRIILQDKKLRVPKKYVDKYLKGISNPIFLIFPNGVEQKIFWVKSNGDIWFQKNWESFAKPFKYGYLLTFKFIGGSYFKVKIFGANTLEISYSNIKSVDEGAEDTKEAQESDEEATEEGEESDESDEESDKVEMPKKAQRTINDKRKFSGSNKVAMVKKARKYQTSEAVNENPSFVVIMTQSYTNGYFLWLPCEFSREHLIDFNGTATIRVDNERSVEVSLRYYGNKERSCLGGGWKIFREKYNLQVDDVCKFEMIRRRPFSFIVTITRAGNEAIPKKLLEGPNVMKHNTFKVLVKNTSPGVPKEFMKRGCNENIVELKMGRKSWFVKVNYYESIHGCRFSKGWTKFMKACKVKIGDTCLFRLIDERKFVFDVSI* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1135 384 Gene3D - 292 384 IPR015300 -
Mtr1g1135 384 Gene3D - 160 281 IPR015300 -
Mtr1g1135 384 Pfam B3 DNA binding domain 184 279 IPR003340 GO:0003677
Mtr1g1135 384 Pfam B3 DNA binding domain 311 380 IPR003340 GO:0003677
Mtr1g1135 384 ProSiteProfiles B3 DNA-binding domain profile. 183 280 IPR003340 GO:0003677
Mtr1g1135 384 MobiDBLite consensus disorder prediction 114 137 - -
Mtr1g1135 384 Gene3D - 2 96 IPR015300 -
Mtr1g1135 384 SUPERFAMILY DNA-binding pseudobarrel domain 180 279 IPR015300 -
Mtr1g1135 384 MobiDBLite consensus disorder prediction 110 148 - -
Mtr1g1135 384 ProSiteProfiles B3 DNA-binding domain profile. 294 384 IPR003340 GO:0003677
Mtr1g1135 384 CDD B3_DNA 311 384 IPR003340 GO:0003677
Mtr1g1135 384 PANTHER B3 DOMAIN-CONTAINING 309 384 - -
Mtr1g1135 384 PANTHER B3 DOMAIN-CONTAINING 5 279 - -
Mtr1g1135 384 SMART B3_2 184 280 IPR003340 GO:0003677
Mtr1g1135 384 SMART B3_2 9 95 IPR003340 GO:0003677
Mtr1g1135 384 SMART B3_2 299 383 IPR003340 GO:0003677
Mtr1g1135 384 CDD B3_DNA 182 278 IPR003340 GO:0003677
Mtr1g1135 384 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 279 - -
Mtr1g1135 384 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 309 384 - -
Mtr1g1135 384 SUPERFAMILY DNA-binding pseudobarrel domain 310 381 IPR015300 -
Mtr1g1135 384 SUPERFAMILY DNA-binding pseudobarrel domain 11 95 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1135 Mtr-Chr1 12931087 12933237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1135 7 281 B3 DNA Binding Superfamily AT3G18990 26.254 3.76e-21 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1135 B3 2.6e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1135 - - mtr:MTR_1g035570 612.838