Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1134 ATGTCATTTCAACAAGTTCCAGATTTACATAGAATAATATTGCAAGATAAGAAACTTAGGGTTCCAAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAATGGTATTCAACAAGAAATATTTTGGGTGGAGAGAAATGGTGATATTTGGTTTCAAAAGAATTGGGAAAGTTTTGCTAAGTCTCTGAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATACTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAACTATGCAAATATCAAATATGTTGATGAAGGTGCTAAAGCCACAGAAGAAGGTAAAGGAAGTGATGAATCAAGTGATGCTGAAGCCACTGAAAAAGGTGAAGAAAATGACGAATCATGTGATGAAGCTAGTGATGAGAGTGTTGAAATGCCAAAGCAAGCTCAAAGAAATGGCAAGAGAAAAGTAAGTATGGATTTTGACACCACCCAACAAAAACTCTCAGGTAGTAACAAAGTAGCAATGGTGAAGAAGGCTAGAAAATACCAAACATCTGAAGCTGTTAATGAGAATCCCTTTTTTGAAATTACAATGACACAATCTTACGCCAATGGCTATCACTTGTGGTTACCATGTGAGTTTTCAAGAGAACACTTGAACGATTTTAAAGGGACTGCAACAGTAAGGGTTGGTAAAGAAAGGACTGTGAAATTGAGTTTGAGGTATTATGGTACCAAGAAAAAACATGGTATAAGTGGTGGATGGAAATTATTCAGACAAAAATATAATTTGAAAGTTGATGATGTTTGTAAATTTGAGATGATTGGACGAAGACCAGTTTCATTCAATGTTACTATTACTTGTGCCAAAAACGAACCAAACCCAAAGAAATTACCAGGTCATAAAAAAGGGGTCTCTTGTGGTAATAGTGTTGTAAAGAAGGAACACATTGGAGGAACTTCTAGGAGCCATCCAAAAGTAAAGGAAGGTCCTGATGTGATGAAGCATAACACATTCAAGGTTATGGTGAAGAACAATGCCCCGAGTGTACCAAAGGAGTTTATGAAAAGGGGATGTAATGAAAATATCGTGGAATTGAAAATGGGGGGAAAGTCATGGTACGTAAAAGTGAACTATTATGATAGTATTTGTGGCTGTAGGTTCGGTAAAGGTTGGAGACAATTTATGAAAGCATGCAAAGTGGAGATTGGAGATATTTGTCTCTTTAAGTTGATTGATGAGAGAATTTTTTTGTTTGATGTTTCAATTGTTGGAAAGAATCCATTAGCTATGCTTCTTTAA 1317 0.3493 MSFQQVPDLHRIILQDKKLRVPKKYVEKYWKGISNPIFLKFPNGIQQEIFWVERNGDIWFQKNWESFAKSLKYGYLLTFKFIGGSYFKVKIFGANTLEINYANIKYVDEGAKATEEGKGSDESSDAEATEKGEENDESCDEASDESVEMPKQAQRNGKRKVSMDFDTTQQKLSGSNKVAMVKKARKYQTSEAVNENPFFEITMTQSYANGYHLWLPCEFSREHLNDFKGTATVRVGKERTVKLSLRYYGTKKKHGISGGWKLFRQKYNLKVDDVCKFEMIGRRPVSFNVTITCAKNEPNPKKLPGHKKGVSCGNSVVKKEHIGGTSRSHPKVKEGPDVMKHNTFKVMVKNNAPSVPKEFMKRGCNENIVELKMGGKSWYVKVNYYDSICGCRFGKGWRQFMKACKVEIGDICLFKLIDERIFLFDVSIVGKNPLAMLL* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1134 438 MobiDBLite consensus disorder prediction 144 165 - -
Mtr1g1134 438 MobiDBLite consensus disorder prediction 114 166 - -
Mtr1g1134 438 CDD B3_DNA 197 291 IPR003340 GO:0003677
Mtr1g1134 438 ProSiteProfiles B3 DNA-binding domain profile. 198 295 IPR003340 GO:0003677
Mtr1g1134 438 SUPERFAMILY DNA-binding pseudobarrel domain 195 294 IPR015300 -
Mtr1g1134 438 CDD B3_DNA 13 92 IPR003340 GO:0003677
Mtr1g1134 438 Pfam B3 DNA binding domain 199 290 IPR003340 GO:0003677
Mtr1g1134 438 Pfam B3 DNA binding domain 345 422 IPR003340 GO:0003677
Mtr1g1134 438 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 292 - -
Mtr1g1134 438 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 347 429 - -
Mtr1g1134 438 MobiDBLite consensus disorder prediction 127 143 - -
Mtr1g1134 438 SMART B3_2 199 291 IPR003340 GO:0003677
Mtr1g1134 438 SMART B3_2 343 432 IPR003340 GO:0003677
Mtr1g1134 438 SMART B3_2 9 95 IPR003340 GO:0003677
Mtr1g1134 438 Gene3D - 4 96 IPR015300 -
Mtr1g1134 438 CDD B3_DNA 344 428 IPR003340 GO:0003677
Mtr1g1134 438 SUPERFAMILY DNA-binding pseudobarrel domain 344 426 IPR015300 -
Mtr1g1134 438 ProSiteProfiles B3 DNA-binding domain profile. 338 432 IPR003340 GO:0003677
Mtr1g1134 438 Gene3D - 326 432 IPR015300 -
Mtr1g1134 438 Gene3D - 175 296 IPR015300 -
Mtr1g1134 438 PANTHER B3 DOMAIN-CONTAINING 347 429 - -
Mtr1g1134 438 PANTHER B3 DOMAIN-CONTAINING 5 292 - -
Mtr1g1134 438 SUPERFAMILY DNA-binding pseudobarrel domain 17 95 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1134 Mtr-Chr1 12924291 12927199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1134 7 290 B3 DNA Binding Superfamily AT3G18990 25.826 6.87e-22 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1134 B3 5.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1134 - - mtr:MTR_1g035570 607.831