Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1131 ATGGCTGTGGAAGTGAGTTTGGGGTATTATGATACCCGCAGAAATTCTTGTGTGGGTGGTGGTTGGAAAATATTTAGGGAAAAATATAATTTGCAAGTTGATGATGTTTGTAAATTTGAGATGATTCAACGGAGACCTTTTTCATTCACCGTTACTATTACTCGTGCCAGAAACGGACCAAGCCTTACGAAATTACCAGAAGGTCGTGATTGGAAGGAGCATAACACGTTCAAGGTTATGGTGAAGAATAGAGTTCCGACTGTACCAAAGGAGTTTATGAACGGAGGAAGTCATGAAAATATTTTGGAGTTGAAAGTGGGGGGACAGTCATGGTTCGTAAAAGTCAATTATTACGAGAGTGTTCGGAGCTGCAGGTTTAGTAAAGGTTGGAGAAAATTCATGAAAGCATGCAAAGTGGAGATCGGAGATACTTGTCTCTTTAAGTTAATTGATGAGAGAAAATTTGTGTTTGATGTTTCAATGAATGCCATTAATGCAAGAAGGTCTCGGGGTTGTGGTGAAGACCGTTTTCATGCTAAAAACCAAAAACTAGCAGGTTTTGCAATCAGGATACCTAATCAGTTTTCGAAGAAATACATGAATGAGTTGTTGCAAAGGAATGCAACGATTAGAAGTGTTGCTGTGGATAAGACATGGTTAGAGACATTAAAATTCGATGAATGCAATCGAAATTTTGCAATGCGAGCTGGTTGGAAGTCATTTGTACAGGAACGTAACTTGCAAGCTGGTGATGTATTCAAATTTGAGATGACTCAACGAAAACCACTTTCATTCACTATTACTATTATCCCAGCTACTACATAA 825 0.3855 MAVEVSLGYYDTRRNSCVGGGWKIFREKYNLQVDDVCKFEMIQRRPFSFTVTITRARNGPSLTKLPEGRDWKEHNTFKVMVKNRVPTVPKEFMNGGSHENILELKVGGQSWFVKVNYYESVRSCRFSKGWRKFMKACKVEIGDTCLFKLIDERKFVFDVSMNAINARRSRGCGEDRFHAKNQKLAGFAIRIPNQFSKKYMNELLQRNATIRSVAVDKTWLETLKFDECNRNFAMRAGWKSFVQERNLQAGDVFKFEMTQRKPLSFTITIIPATT* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1131 274 SUPERFAMILY DNA-binding pseudobarrel domain 188 268 IPR015300 -
Mtr1g1131 274 SMART B3_2 76 163 IPR003340 GO:0003677
Mtr1g1131 274 SMART B3_2 177 273 IPR003340 GO:0003677
Mtr1g1131 274 ProSiteProfiles B3 DNA-binding domain profile. 1 57 IPR003340 GO:0003677
Mtr1g1131 274 ProSiteProfiles B3 DNA-binding domain profile. 71 163 IPR003340 GO:0003677
Mtr1g1131 274 SUPERFAMILY DNA-binding pseudobarrel domain 77 158 IPR015300 -
Mtr1g1131 274 SUPERFAMILY DNA-binding pseudobarrel domain 5 55 IPR015300 -
Mtr1g1131 274 CDD B3_DNA 189 271 IPR003340 GO:0003677
Mtr1g1131 274 CDD B3_DNA 77 160 IPR003340 GO:0003677
Mtr1g1131 274 PANTHER B3 DOMAIN-CONTAINING 85 161 - -
Mtr1g1131 274 PANTHER B3 DOMAIN-CONTAINING 188 270 - -
Mtr1g1131 274 PANTHER B3 DOMAIN-CONTAINING 14 56 - -
Mtr1g1131 274 ProSiteProfiles B3 DNA-binding domain profile. 174 273 IPR003340 GO:0003677
Mtr1g1131 274 Gene3D - 176 273 IPR015300 -
Mtr1g1131 274 Gene3D - 2 58 IPR015300 -
Mtr1g1131 274 Gene3D - 69 165 IPR015300 -
Mtr1g1131 274 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 188 270 - -
Mtr1g1131 274 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 85 161 - -
Mtr1g1131 274 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 56 - -
Mtr1g1131 274 Pfam B3 DNA binding domain 186 271 IPR003340 GO:0003677
Mtr1g1131 274 Pfam B3 DNA binding domain 82 157 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1131 Mtr-Chr1 12904485 12906960 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1131 B3 5.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1131 - - mtr:MTR_1g035570 255.373