Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1130 ATGGTACAACAACTTTGGTTTATTTTAGCCCTTGGCATTCATATTCTACAACATGTGAGGCTAGCACAGTGGCTTCAACAATGGATCATAAACCCAGATAAGGTGGCTAGTCATTTATCCAGTGTTACACTGTCGTTGATTTGGAAGGGTCGGAACCAATTGATTTTCAATAAAACAACTTTCTGTCCTGTATCTACTGCGAAGGAAATATCCAATTTTTCTGCAGAATTTTTTATTGCTAATCCGTTGAAGATGAAGTCTGTCAGAGTTTCAGAACTAGAAAGCTGGGAGCAACCGAATGTTGGCACAACAAAGATCAATGTAGATGCAGGATGCTTTCAAACTGGTACAACTGGTTGGGGCTGTTTGGCCCGGGATCACACTGGCACGAGAGTTCCAAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCATTAAATTTCCAAATGGTGTTCAACAAGAAATATTTTGGGTGGAGAGAAATGGTGATATTTGGTTTCAAAAGAATTGGGAAAGTTTTGCTAAGTTTCTGAAATATGGATATCTGTTAACATTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAACTACTCCAATATCAAATCAGTTGATGAAGGTGCTGAAGACACAAAAGAAGAAGGTAAAGAAAGTGATGAATCAAGTGATGATGAAGCCACTGAAGAAAGTCATGAAGATAGTGATGAATCAAGTGATGAGAGTTCAGATGAGGTTGAAATGCCAAAGCAAGTTCAAAGAAATGGCAAGAGAAAAGTGAGTATGGATTTTGACACTACCCAACCAAAATTCTCAGGTAGTAAGAAAGTAGCCATGGTGAAGAAGGCTAGAAAATACCAAACATCTGAAGCTGTTAATGAGAATACCTCTTTTGAAGTTACAATGACTCAGTCTTATGCCAATGGCTATTTCTTGTGGATACCATTTGAGTTTTCAAGAGAACACTTGAAAGATTTTAATGGAACTGCAACAATAAGGGTTGGTAATGACAGGAGTGTGGAAGTGAGTTTGAGGTATTATGGTACCCAGAAAAAATATGGTATGGGTGGTGGATGGAAATTATTCAGACAAAAATATAATTTGCAAGTTGATGATGTTTGTAAATTTGAGATGATTCAAGGGCGACCAAGTTCATTCATTGTTACTATTACTCGTGCCATAAACAAACCAAGCCCAAAGAAATCACTAGGTCATAAAAAAGGGGTCTCTTGTGGTAAGAGTGTAGTAAAGAAGGAACACATTGGAGGAACTTCTAGGAGCCATCCAAAAGTAAAGGAAGAAGGTCGTGATGTGAAGGAGCATAAGACATTCAAGGTTTTCTTGAAGAACAAAACCCCGTGTGTACCAAAGGAGTTTATGAAAAAAGGATGTAATGAAAATATTGTGGAGTTGAAAATGGGGAGAAAGTCATGGTTTGTAAAAGTCAATTTTTATCGGAGTCTTTGTGGCTGTAGGTTCAGTAAAGGTTGGAGACAATTTATGAAAGCAGGCAAAGTGGAGATTGGAGATACTTGTCTTTTTAAGTTAATTGATGAGAGGAAATTTGTGTTTGATGTTTCAATTGTAGGAAAGAATACATAA 1641 0.3668 MVQQLWFILALGIHILQHVRLAQWLQQWIINPDKVASHLSSVTLSLIWKGRNQLIFNKTTFCPVSTAKEISNFSAEFFIANPLKMKSVRVSELESWEQPNVGTTKINVDAGCFQTGTTGWGCLARDHTGTRVPKKYVEKYWKGISNPIFIKFPNGVQQEIFWVERNGDIWFQKNWESFAKFLKYGYLLTFKFIGGSYFKVKIFGANTLEINYSNIKSVDEGAEDTKEEGKESDESSDDEATEESHEDSDESSDESSDEVEMPKQVQRNGKRKVSMDFDTTQPKFSGSKKVAMVKKARKYQTSEAVNENTSFEVTMTQSYANGYFLWIPFEFSREHLKDFNGTATIRVGNDRSVEVSLRYYGTQKKYGMGGGWKLFRQKYNLQVDDVCKFEMIQGRPSSFIVTITRAINKPSPKKSLGHKKGVSCGKSVVKKEHIGGTSRSHPKVKEEGRDVKEHKTFKVFLKNKTPCVPKEFMKKGCNENIVELKMGRKSWFVKVNFYRSLCGCRFSKGWRQFMKAGKVEIGDTCLFKLIDERKFVFDVSIVGKNT* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1130 546 Pfam B3 DNA binding domain 311 405 IPR003340 GO:0003677
Mtr1g1130 546 Pfam B3 DNA binding domain 462 540 IPR003340 GO:0003677
Mtr1g1130 546 MobiDBLite consensus disorder prediction 230 256 - -
Mtr1g1130 546 MobiDBLite consensus disorder prediction 257 277 - -
Mtr1g1130 546 SUPERFAMILY DNA-binding pseudobarrel domain 307 405 IPR015300 -
Mtr1g1130 546 PANTHER B3 DOMAIN-CONTAINING 428 542 - -
Mtr1g1130 546 PANTHER B3 DOMAIN-CONTAINING 127 406 - -
Mtr1g1130 546 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 428 542 - -
Mtr1g1130 546 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 127 406 - -
Mtr1g1130 546 CDD B3_DNA 310 405 IPR003340 GO:0003677
Mtr1g1130 546 CDD B3_DNA 468 541 IPR003340 GO:0003677
Mtr1g1130 546 Gene3D - 436 545 IPR015300 -
Mtr1g1130 546 Gene3D - 287 409 IPR015300 -
Mtr1g1130 546 ProSiteProfiles B3 DNA-binding domain profile. 310 407 IPR003340 GO:0003677
Mtr1g1130 546 ProSiteProfiles B3 DNA-binding domain profile. 489 545 IPR003340 GO:0003677
Mtr1g1130 546 SMART B3_2 112 206 IPR003340 GO:0003677
Mtr1g1130 546 SMART B3_2 456 545 IPR003340 GO:0003677
Mtr1g1130 546 SMART B3_2 311 407 IPR003340 GO:0003677
Mtr1g1130 546 MobiDBLite consensus disorder prediction 219 281 - -
Mtr1g1130 546 SUPERFAMILY DNA-binding pseudobarrel domain 467 539 IPR015300 -
Mtr1g1130 546 Gene3D - 122 207 IPR015300 -
Mtr1g1130 546 SUPERFAMILY DNA-binding pseudobarrel domain 130 206 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1130 Mtr-Chr1 12898383 12903622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1130 131 404 B3 DNA Binding Superfamily AT3G18990 24.214 4.68e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1130 B3 2.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1130 - - mtr:MTR_1g035570 535.798