Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1129 ATGGAATATGCGGGCAATTTTGGAGATGGAATTTCAAAGAGCTGCACAAAAACATATGGTTTTAGGGATTCTGTAAGTCTGAATTTACATGAGATGTTCAAGGTTTTTATAACATCATCAGACAAGTTGGTTGTACTACCAAGTGAGCTGTTGAAGAAGCATGGTATATTTAGTGGAAATTCAGTGGAGTTGAGAGTAGGGGAAGGAACATGGTTTGTAGATGTGAGTTATAATGAACATCTCGACCATGGTTGGTTCACTAAAGGTTGGCAAGAATTTGTGAGAGATTGCAAAGTAAAGACTGGAGATACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGA 369 0.374 MEYAGNFGDGISKSCTKTYGFRDSVSLNLHEMFKVFITSSDKLVVLPSELLKKHGIFSGNSVELRVGEGTWFVDVSYNEHLDHGWFTKGWQEFVRDCKVKTGDTCLFETIDVQNHVFKVSIV* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1129 122 SMART B3_2 32 120 IPR003340 GO:0003677
Mtr1g1129 122 Pfam B3 DNA binding domain 38 118 IPR003340 GO:0003677
Mtr1g1129 122 Gene3D - 16 122 IPR015300 -
Mtr1g1129 122 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 31 121 - -
Mtr1g1129 122 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
Mtr1g1129 122 SUPERFAMILY DNA-binding pseudobarrel domain 32 121 IPR015300 -
Mtr1g1129 122 CDD B3_DNA 32 121 IPR003340 GO:0003677
Mtr1g1129 122 PANTHER B3 DOMAIN-CONTAINING 31 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1129 Mtr-Chr1 12893938 12896515 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1129 43 120 REM Transcription Factor Family AT1G49480 31.250 4.97e-06 42.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1129 B3 2.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1129 - - mtr:MTR_1g035520 257.684