Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1128 ATGTCTTTTCAACAAAACGGCACTGGCAGCATTAACAATGGGCGTGGTAGGGAAGCTCAAGGAATGCATTTCTATTTACATGTTCAACAATGCGAACTTCAACACAAAGAACTCATGATTCCAAGGAATTTTGCAGAGAGATATTGGAATGATGTACCAAATCCAATATCCCTTAAACTTCCAAATGGGTCAGCATGCAAAATGAATTGGGTGCAACGCGGTGATGGTATTTGGCTTCAGAATTGGAAGAGGTTTGCATGGTCGCTCCGAAGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTCATGTCATCATATTAGATGATAGTAAATTAGAAATTGACTATTCAAGTATGAGATGCAACGACGATCAAGCAAATACTAAAGAGAGTGATGATGACGACGACGACGACGATGATTATGAGTGTGTTGAGATTCCTAGTGATAGTGAAAATACAAAAATTCCCCTCAAGAAAAAGAGAACCAACTCAAATGGCATTGCTACTACTGCTACTACACCTCAAGGGAGTAACATTCACATGAGAAAAACTAATATCAATGCATCCCAACAAAAAGTTTCGGTTTTTAAAGTTTTGCAGAGGCTAATGGAAACACAGGACATGGGTAAAAAAGCTAAAAATGCACAAAAACTAAATGAGAGAAGTTGCACAAATTCTCATCCCAATGAGAGTCCTAGTTTCACTGTCAAATTATCGCCATATCATGTTGAAGGTGATAATAGATTGGCAATACCTAGTTGGTTTTCGAAAGAATACATGAATGAATTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGACAGGGCATGGCACGTGACATTAAACTTTCATAATAACAGGAGCAGTTTTATAATGAGGGCTGGTTGGAAGTCATTTTCAAAGGAACATGAGTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCTAA 972 0.3796 MSFQQNGTGSINNGRGREAQGMHFYLHVQQCELQHKELMIPRNFAERYWNDVPNPISLKLPNGSACKMNWVQRGDGIWLQNWKRFAWSLRSGDLLVFQYKGGSDFHVIILDDSKLEIDYSSMRCNDDQANTKESDDDDDDDDDYECVEIPSDSENTKIPLKKKRTNSNGIATTATTPQGSNIHMRKTNINASQQKVSVFKVLQRLMETQDMGKKAKNAQKLNERSCTNSHPNESPSFTVKLSPYHVEGDNRLAIPSWFSKEYMNELLQGKATIRSVGEDRAWHVTLNFHNNRSSFIMRAGWKSFSKEHELKVGDVCKFEMTQR* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1128 323 Pfam B3 DNA binding domain 237 322 IPR003340 GO:0003677
Mtr1g1128 323 SUPERFAMILY DNA-binding pseudobarrel domain 233 321 IPR015300 -
Mtr1g1128 323 SMART B3_2 237 323 IPR003340 GO:0003677
Mtr1g1128 323 SMART B3_2 23 113 IPR003340 GO:0003677
Mtr1g1128 323 CDD B3_DNA 35 111 IPR003340 GO:0003677
Mtr1g1128 323 CDD B3_DNA 235 323 IPR003340 GO:0003677
Mtr1g1128 323 SUPERFAMILY DNA-binding pseudobarrel domain 23 111 IPR015300 -
Mtr1g1128 323 ProSiteProfiles B3 DNA-binding domain profile. 237 323 IPR003340 GO:0003677
Mtr1g1128 323 PANTHER B3 DOMAIN-CONTAINING 17 322 - -
Mtr1g1128 323 MobiDBLite consensus disorder prediction 213 235 - -
Mtr1g1128 323 MobiDBLite consensus disorder prediction 221 235 - -
Mtr1g1128 323 Gene3D - 210 323 IPR015300 -
Mtr1g1128 323 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 17 322 - -
Mtr1g1128 323 Gene3D - 17 114 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1128 Mtr-Chr1 12891746 12894130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1128 24 322 B3 DNA Binding Superfamily AT3G18990 25.153 7.01e-22 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1128 B3 1.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1128 - - mtr:MTR_6g061070 432.565