Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1127 ATGTCTTTTCAACAACACTATGGACGTGGAAGTGAAGCTAAGGGAATGCATTTCAGCCTAACAATTCTACCTCATGAGTTGCAAGATCAAGAGCTTATGGTTCCAAGAAATTTTGTGGAAAAGTATTGGAAAGGAGTATCAAATCCAATATCTCTAAAATTTCCAAATGACTCCGAGTGCAAAATGAATTGGGTACTACGTGATAATGATATTTGGCTTCTTAATTGGAAAAAATTTGCGCGGTCGCTTAGATGCGGCGATCTTTTAGTTTTCCAATACAAAGGAGGGTCTGATTTTCATGTCATTATATTAGATGACAGTAAATTGGAAATTGACTATTCAAGTATGAGATTCAACGATCATCAAGATTCTTACAAACATTGTAAACAAGAAGAAGAGAGTGATGATGATTGTGTTGAGATTCTAAATAATATGAATGCAACTCAAGGGACAAATATGAATGCAACCAAGCAAAAAGTCTCAGTTGATGTAGGTGCTGAAGCCACTGAAGAATCAAGTGATGAATCGAGTGATGAGAGTTCATATGAGAATGAAATGCCAAAGCAAGCTCGACGAAGGACAACAAATGGCAAGAGAAAAGTGAGTATGGATTTTGACACCACCCAACCAAAATTCTCAGATTCAGAAGGTCATAAGGTGATGAAACATAACACATTCAAGATTTATGTGAACAATTGCCTATACCCGGATGTACCAAATGAATTTATGAAAAGAGGATGTCATGAAAATCTTGTGGAGTTGAAAATAGGGATACAATCATGGTTCATAAAAGTGAATTATTATCCTAGTATCCGTGGCTGTAGATTCGGTAAAGGTTGGAGAAATTTTGTGGAAAATTGCAAAGTGAAGTTTGGAAATACTTGTCTCTTCGAGCTGATTGATAAGGACAAATTTGTGTTTAAAGTTTCAATTGTTAGATAG 942 0.3567 MSFQQHYGRGSEAKGMHFSLTILPHELQDQELMVPRNFVEKYWKGVSNPISLKFPNDSECKMNWVLRDNDIWLLNWKKFARSLRCGDLLVFQYKGGSDFHVIILDDSKLEIDYSSMRFNDHQDSYKHCKQEEESDDDCVEILNNMNATQGTNMNATKQKVSVDVGAEATEESSDESSDESSYENEMPKQARRRTTNGKRKVSMDFDTTQPKFSDSEGHKVMKHNTFKIYVNNCLYPDVPNEFMKRGCHENLVELKIGIQSWFIKVNYYPSIRGCRFGKGWRNFVENCKVKFGNTCLFELIDKDKFVFKVSIVR* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1127 313 MobiDBLite consensus disorder prediction 162 216 - -
Mtr1g1127 313 Pfam B3 DNA binding domain 258 312 IPR003340 GO:0003677
Mtr1g1127 313 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 313 - -
Mtr1g1127 313 CDD B3_DNA 259 313 IPR003340 GO:0003677
Mtr1g1127 313 CDD B3_DNA 17 105 IPR003340 GO:0003677
Mtr1g1127 313 Gene3D - 191 313 IPR015300 -
Mtr1g1127 313 SUPERFAMILY DNA-binding pseudobarrel domain 259 310 IPR015300 -
Mtr1g1127 313 PANTHER B3 DOMAIN-CONTAINING 10 313 - -
Mtr1g1127 313 SMART B3_2 225 313 IPR003340 GO:0003677
Mtr1g1127 313 SMART B3_2 18 107 IPR003340 GO:0003677
Mtr1g1127 313 ProSiteProfiles B3 DNA-binding domain profile. 259 313 IPR003340 GO:0003677
Mtr1g1127 313 SUPERFAMILY DNA-binding pseudobarrel domain 14 105 IPR015300 -
Mtr1g1127 313 MobiDBLite consensus disorder prediction 181 200 - -
Mtr1g1127 313 Gene3D - 10 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1127 Mtr-Chr1 12877609 12879976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1127 18 313 B3 DNA Binding Superfamily AT3G18990 22.515 5.64e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1127 B3 3e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1127 - - mtr:MTR_1g035510 243.047