Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1126 ATGTCATTTCAACAACAACAACACAGCAACGGTCTTCACTATGGGCGTGGAAGTGAAGCTCATGGAATGCATTTTTATCTAACTGTTCAACATCGTCAGTTGCAAGATCATGACCTTATGGTTCCGAGAAATTTTGTGGACAAGTTTTGGAAAGATGTACCAAATCCAATATCTCTAAAATTTCCAAATGATTCTGAATGTAAAATGAATTGGGTACTACGTGGTAATGATATTTGGCTTCTGAATTGGAAAAAATTTGCAAGGTCGCTTCGATGTGGTGATCTTTTAGTTTTCCAATACAAAGGAGGGTCTGATTTTCATGTCATTATATTAGATGACGGTAAATTAGAAATTGACTACTCAAGTATGAAATGCAACGATGACCAAGATTCTAACAAGATTTGTAAACAAGAAGAAGAGAGTGATGACAATGATTGTGTTGAGATTCTTAATGATATTGCTACTACTTCTACTGCCCCTGAAGGGACAAATATTGACAAGAGAAGAATTAATATGAATGCATCCAAGCAAAAAGTGTCAGGCAAGTTCATCTACTTCATTTGA 564 0.3546 MSFQQQQHSNGLHYGRGSEAHGMHFYLTVQHRQLQDHDLMVPRNFVDKFWKDVPNPISLKFPNDSECKMNWVLRGNDIWLLNWKKFARSLRCGDLLVFQYKGGSDFHVIILDDGKLEIDYSSMKCNDDQDSNKICKQEEESDDNDCVEILNDIATTSTAPEGTNIDKRRINMNASKQKVSGKFIYFI* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1126 187 PANTHER B3 DOMAIN-CONTAINING 17 177 - -
Mtr1g1126 187 CDD B3_DNA 39 112 IPR003340 GO:0003677
Mtr1g1126 187 Gene3D - 18 114 IPR015300 -
Mtr1g1126 187 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 17 177 - -
Mtr1g1126 187 SUPERFAMILY DNA-binding pseudobarrel domain 23 112 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1126 Mtr-Chr1 12871776 12872798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1126 21 163 B3 DNA Binding Superfamily AT3G18990 29.932 2.55e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1126 - - mtr:MTR_1g033740 281.567