Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1125 ATGCCAAAGCAAGCTCGACGAAGGACAAGAAATGGCAAGAGAAAAGTGAGTATGGATTTTGACACTACCCAACCAAAATTCTCAGGTAGTAAGAAAGTAGCCATGGTGAAGAAGGCTAGAAAATACCCAACTGTTAATGAGAATCCCTTTTTTGTAGTTATAATGACACAATCTTACACCAATGGCTATTTCTTGTGGGTACCAAGTAAGTTTTCAAGAGAACACTTGAACAATTTTAAAGGAACTGCAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAAGTGAGTTTGAGGTATTATGATACCAAAGATAAGTCTTGTGTGGGTGGTGGTTGGAAAATATTTAGGGAAAAATATAATTTGCAAGTTGACGATGTTTGTAAATTTGAGATGATTCAACGGAGACCTTTTTCATTCACCGTTACTATTACTCGTGCCAGAAATGGACCAAGTGGGGTCCCTTGTGGTAACAATGTTGTAAAGCAGAAAGACATTGAAGGAACGTCTTCTGGGAGCCGTCCAAAAGAGAATTTTCTTGATGAAGGTCGTGATGTGATGAAGCATAACACATTGAAGGTTTTGGTGAAGAACAAAGCTCCGAGTGTACCAAAGGAGTTTATGAAAAAAGGAAGTAATGAAAATATTGTGGAGTTGAAAATGGGAAGAAAGTCATGGTTCGTAAAAGTCAATTATTATGAGAGTGTTCATGGCTGGAGGTTCAATAAAGGATGGAGAAAATTTATGGAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCTTTAATCTAATCGATGAGAGAAAATTTGTGTTTGATGTTTCAATTATAGGAAGAACCCATTAG 843 0.3725 MPKQARRRTRNGKRKVSMDFDTTQPKFSGSKKVAMVKKARKYPTVNENPFFVVIMTQSYTNGYFLWVPSKFSREHLNNFKGTATIRVGNERSVEVSLRYYDTKDKSCVGGGWKIFREKYNLQVDDVCKFEMIQRRPFSFTVTITRARNGPSGVPCGNNVVKQKDIEGTSSGSRPKENFLDEGRDVMKHNTLKVLVKNKAPSVPKEFMKKGSNENIVELKMGRKSWFVKVNYYESVHGWRFNKGWRKFMEECKVEIGDTCLFNLIDERKFVFDVSIIGRTH* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1125 280 MobiDBLite consensus disorder prediction 1 24 - -
Mtr1g1125 280 CDD B3_DNA 201 276 IPR003340 GO:0003677
Mtr1g1125 280 ProSiteProfiles B3 DNA-binding domain profile. 50 147 IPR003340 GO:0003677
Mtr1g1125 280 SMART B3_2 190 279 IPR003340 GO:0003677
Mtr1g1125 280 SMART B3_2 51 147 IPR003340 GO:0003677
Mtr1g1125 280 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 200 277 - -
Mtr1g1125 280 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 146 - -
Mtr1g1125 280 CDD B3_DNA 49 145 IPR003340 GO:0003677
Mtr1g1125 280 Gene3D - 176 279 IPR015300 -
Mtr1g1125 280 Gene3D - 28 148 IPR015300 -
Mtr1g1125 280 SUPERFAMILY DNA-binding pseudobarrel domain 47 145 IPR015300 -
Mtr1g1125 280 Pfam B3 DNA binding domain 51 146 IPR003340 GO:0003677
Mtr1g1125 280 Pfam B3 DNA binding domain 196 276 IPR003340 GO:0003677
Mtr1g1125 280 SUPERFAMILY DNA-binding pseudobarrel domain 201 274 IPR015300 -
Mtr1g1125 280 ProSiteProfiles B3 DNA-binding domain profile. 185 279 IPR003340 GO:0003677
Mtr1g1125 280 PANTHER B3 DOMAIN-CONTAINING 200 277 - -
Mtr1g1125 280 PANTHER B3 DOMAIN-CONTAINING 11 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1125 Mtr-Chr1 12869197 12871528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1125 48 176 B3 DNA Binding Superfamily AT3G18990 31.111 8.52e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1125 B3 1.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1125 - - mtr:MTR_1g035490 576.244