Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1124 ATGGCCACGGTCGATGCCGAAATCTCCGTCGGCGATGGAGACAGGAGAAAAAGGACCAAGGACGAGAGAGAAGGGGAACAGGTTGATGTGCAAGGTCGGATCGGAAAACAAAGAGAGTGGGAGCTAATAAGATTGAAGGACAAAATTTATAGTGTGGAATATTTTTTGGATCTGGAAAAATATAAAGTCAACGTTTGTGGTCTTAATATCAAGAATCTCACTTTCTTTTACAATACAATCAGAGTTGTACTGAGGGATAAAAATTCAACAACAATGACTAGCAAAAGGGGAAATAAGCATACACTCTCTGCTTCTACTATTCGTTTCTTCAGAGTTATTACCACACCAATTCTTCAAGATGGAAAGCTTATGATACCAAAAGGTTTCACTAGGGACCATATGAGTGACATGTTAAACCCAGTGTTTCTCAAGACTCCAGATGGCAAAAAATGGGAAATGTGCACGACTAAAATCAATGGGGATATTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTACATATTATTCACTAGATCATGGGCACATGGTATTATTTCAATATGAAGAAAACTCTCATTTTGTGGTGCATATATTTTCCAAGAGTACCCTTGAGATTGAATATCCTTTCCATGGCAATCAACATGAACAAAACAACTTTGACCAACAAAGTAGTGACGAGGACTCCATTGAAATTTTGGACAAGTCACCTTCATGCAAGAAGAAAACTAGACCAAAATCGCCAATTATGTGTCCTCAACCACATAAGAAATTGAGAAGTGACTCAAGTGAAGGTGTTGGAACAAGCTCGAGATTCCAAAACTTGCCTAAGCATCATGTCCAATCTAGTGAGGATACGGGTGCTAGTGCTGAATTCCGAAAAGTAAAGCACGAGCTAGAACAAGAGCAATACCAAGAGCAGGAGCAGTTAAATAGAGTTAGAAGCTTCAAATCAAATAATCCTTCTTTCAGGATTACCATGAAGTCTTCACATATTTATAGCCATTCCTTGTATGTCCCATCACAATTTGCTAACAATCATATGAAGAAAGAGCAAAGTGACATTCTTCTTCAACTCTTGGATGGGAGAGTTTGGGATGCTAAATATTGTTCAGCAAAAATTAATGGTGGATGGAAGAAATTTGCAGTACACAACAAGTTGAAAATTGGGGATGTGTGTATTTTTGAACTAACCAAAAGCCAATACCTTACTTTGAAAGTAATAATATTTAGACTTGAGGAAGATCCACACTCCCCTTCACCTCAAGAATCAATTCAACGAGACAAAGACTTCTCGGATGTTGAAAGCGAAACTATTATGACAAATAAAGAAGAGAAGGCAACCCAAAAAACTTCATTGCGGACAAAGGCTGAATTCCTTACGAATGAAGCTGAGAATCAAGCTGATAAATTCAAGTCCAAATATCCATTTTTCAAGGTCGATATTATGCCAAATCAACGAGGGCATTCTAGATTGCTTGTACCAAATTCCTTCATAACAAATTACTTGGATAACAAGGAACAGATGATGATTCCAAGAAATTTTGCAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAGACTTCCAAATGAGTTTGAGTGCAAAATGTTTTGGGTACGACGTGGATACGATATTTGGTTAGTGAATTGGAAAAGATTTGCACGGTCGCTTAGATGTGGAGATCTTTTAGTTTTTCAATATAAAGGAGGGTCAGATTTTCATGTCATCATATTAGATGATAGTAAATTAGAAATCGACTATTCAAGTATGAGATGCAACGACGAACAAGATTCTAACAAGCACTTTAAACAAGAAGAAGAATGTGATGATGATTGTGTTGAGATTTTGAGTGATATTGCTACACCTCAAGGAACAAACATTGACAAGAATTTTTTTTTGACTGCAGCCCAGCAAAAAAATACAGGTACTAACAAAGGAAGCATGACTAAGAAAGCAAAGAGGTGTTCAATAACTGGAGTGGTTAATGAGAAATCCAATAATGGAAATCCAAGTTTTGAACTTAAATTGACACGAAGTTATGTCCATGGCCGTTTATGTTGGATACCAACAAAGTTTTCAAGAGAATACTTGAACGAGTTCGAAGGGTTTGCAAGGTTAAGGGTTGGTGAGGATAGAGCTTGGAAGGTGAATGTGAAGTTTGATTATGGTAAAAGATGTTCTATTCTGAATGTAGGTTGGAATTTATTTACCAAAGATAATAACTTGCAAGTTGGTGATGTGTGTAAGTTTGAGATGACTCAATCCGAACCACTTTCATTTGATATTTCTATTTCTCGAGTTAGAGAGGAACCAAGCCCTAACAAATTGCAAGGTTATGAAAAAGAGATATCTTCAACAAATTCAGGAGGTTCTAATGTGATGAAACATAACACATACGAGCTTTTTGTGAATTCCTCCTACCCGTTTGTACCTGATGATTTTTTTGAATAG 2457 0.3679 MATVDAEISVGDGDRRKRTKDEREGEQVDVQGRIGKQREWELIRLKDKIYSVEYFLDLEKYKVNVCGLNIKNLTFFYNTIRVVLRDKNSTTMTSKRGNKHTLSASTIRFFRVITTPILQDGKLMIPKGFTRDHMSDMLNPVFLKTPDGKKWEMCTTKINGDIWFQKGWKEFATYYSLDHGHMVLFQYEENSHFVVHIFSKSTLEIEYPFHGNQHEQNNFDQQSSDEDSIEILDKSPSCKKKTRPKSPIMCPQPHKKLRSDSSEGVGTSSRFQNLPKHHVQSSEDTGASAEFRKVKHELEQEQYQEQEQLNRVRSFKSNNPSFRITMKSSHIYSHSLYVPSQFANNHMKKEQSDILLQLLDGRVWDAKYCSAKINGGWKKFAVHNKLKIGDVCIFELTKSQYLTLKVIIFRLEEDPHSPSPQESIQRDKDFSDVESETIMTNKEEKATQKTSLRTKAEFLTNEAENQADKFKSKYPFFKVDIMPNQRGHSRLLVPNSFITNYLDNKEQMMIPRNFAERYWKDVSNPISLRLPNEFECKMFWVRRGYDIWLVNWKRFARSLRCGDLLVFQYKGGSDFHVIILDDSKLEIDYSSMRCNDEQDSNKHFKQEEECDDDCVEILSDIATPQGTNIDKNFFLTAAQQKNTGTNKGSMTKKAKRCSITGVVNEKSNNGNPSFELKLTRSYVHGRLCWIPTKFSREYLNEFEGFARLRVGEDRAWKVNVKFDYGKRCSILNVGWNLFTKDNNLQVGDVCKFEMTQSEPLSFDISISRVREEPSPNKLQGYEKEISSTNSGGSNVMKHNTYELFVNSSYPFVPDDFFE* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1124 818 CDD B3_DNA 320 410 IPR003340 GO:0003677
Mtr1g1124 818 MobiDBLite consensus disorder prediction 1 25 - -
Mtr1g1124 818 SUPERFAMILY DNA-binding pseudobarrel domain 667 758 IPR015300 -
Mtr1g1124 818 CDD B3_DNA 672 768 IPR003340 GO:0003677
Mtr1g1124 818 ProSiteProfiles B3 DNA-binding domain profile. 321 412 IPR003340 GO:0003677
Mtr1g1124 818 Gene3D - 651 772 IPR015300 -
Mtr1g1124 818 Gene3D - 300 413 IPR015300 -
Mtr1g1124 818 Gene3D - 457 583 IPR015300 -
Mtr1g1124 818 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 101 411 - -
Mtr1g1124 818 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 505 769 - -
Mtr1g1124 818 CDD B3_DNA 108 199 IPR003340 GO:0003677
Mtr1g1124 818 Coils Coil 449 469 - -
Mtr1g1124 818 ProSiteProfiles B3 DNA-binding domain profile. 673 770 IPR003340 GO:0003677
Mtr1g1124 818 SMART B3_2 322 412 IPR003340 GO:0003677
Mtr1g1124 818 SMART B3_2 109 201 IPR003340 GO:0003677
Mtr1g1124 818 SMART B3_2 674 770 IPR003340 GO:0003677
Mtr1g1124 818 SMART B3_2 497 583 IPR003340 GO:0003677
Mtr1g1124 818 MobiDBLite consensus disorder prediction 262 287 - -
Mtr1g1124 818 SUPERFAMILY DNA-binding pseudobarrel domain 501 590 IPR015300 -
Mtr1g1124 818 CDD B3_DNA 476 581 IPR003340 GO:0003677
Mtr1g1124 818 PANTHER B3 DOMAIN-CONTAINING 505 769 - -
Mtr1g1124 818 PANTHER B3 DOMAIN-CONTAINING 101 411 - -
Mtr1g1124 818 Gene3D - 102 202 IPR015300 -
Mtr1g1124 818 SUPERFAMILY DNA-binding pseudobarrel domain 105 201 IPR015300 -
Mtr1g1124 818 MobiDBLite consensus disorder prediction 9 25 - -
Mtr1g1124 818 ProSiteProfiles B3 DNA-binding domain profile. 108 201 IPR003340 GO:0003677
Mtr1g1124 818 Pfam B3 DNA binding domain 114 200 IPR003340 GO:0003677
Mtr1g1124 818 Pfam B3 DNA binding domain 324 410 IPR003340 GO:0003677
Mtr1g1124 818 Pfam B3 DNA binding domain 674 762 IPR003340 GO:0003677
Mtr1g1124 818 MobiDBLite consensus disorder prediction 235 287 - -
Mtr1g1124 818 SUPERFAMILY DNA-binding pseudobarrel domain 315 411 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1124 Mtr-Chr1 12853224 12863725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1124 475 769 B3 DNA Binding Superfamily AT3G18990 24.438 2.91e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1124 B3 6.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1124 - - mtr:MTR_1g035460 791.956