Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1123 ATGAATCCTCATAATCCAAACCAAACATTTCCATCAGCACCACCTGGTATTCCTTTTCCTATGCTTACACCGAAGCAAGAGCCTCGGGATGAAACTATACAAGAAATTCAATATCCAAACCTAGAAAATTTACCGAACCAAAATCTAAACCTAAATCTAAGTCTGAACCTAGATTTTGTTTCTCAAGCCCTAGAACAACCGACCACCACCACCGCCGGCGCCGGCACCGTCGACGCTGCCAGAATGGCGGAGATTTTTCGACGGTCGTTTACTGAAGGATTACAACGACAGATTCAAAACAATGACGCTGTTGATGAAAATCCAAATGCAAATGCAAGAGCTATTGTTCCGGTTTCTGCGTCTGAGAGTAATTACAATAATGCCCCTCCTGCTGGTGAGGTTGTGAATGTACGGAAACATAAAGAGCTTGTTCGAATGACGGATGTTGGGTTACCGGATCAGCGTCAGTTTCGGGACGTGGTTAGGAGGACGAGGATGGTTTATGATTCGGTTCGTGTTTTAGCTATGGCTGAAGAGGAAGGGAATTTTAATGTTAGGAGAGTGAGAAGTGATTTGAAAGCTTCTGCTACGATGAGGAGTCGAGGATTGTGGCTGAATCGCGATAAGAGGATTGTTGGCGCGATTCCTGGGATTTGTATCGGTGATGTGTTTTTGTATAGGATGGAGTTGTGTGTTGTTGGTTTACATGGTCAACCACAAGCTGGGATTGATTATTTGCCGGGGAGTATGAGTTCGAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCTGGTGGGTATGAGGATGATGTTGATGAAGGTGATGTTATTATTTACTCGGGTCATGGTGGGCAGGATAAGAATTCGAGGCAGGTTTTTCATCAGAAGCTGGAAGGTGGGAATCTTGCTATGGAGAGGAGTATGCATTATGGGATTGAGGTAAGGGTTATTCGCGGTGTGAGGTATGAAGGTACATCTTCGACTTCGGGTAAGGTTTACGTTTATGATGGATTGTATAGGATTATTGAATGCTGGTTTGATGTTGGTAAAAGTGGTTTTGGTGTTTTTAAGTTTAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTTGATTTTAAAGGAGGCTTTTTTGCTTAGGAGAGATCCTTTGTGTTATAAACCTATGTGTGTTATATCTCTTGATATTTCCAAGGGTATGGAGCGTGTCGGTATAAGACTTTTTAATGATATTGATAGATGTAATGATCCGATGTGTTTTGAGTATCTTCCTAGGGCTACTTTTCCGCACTTCGTGTTTCATGAAAGTGGGAATGCAACAGGTTGTCAATGTGAGGGCTTTTGTGGAGAAGGATGTTTTTGTTTCATAAAAAATGGAAATGACTTTCCTTATAGTCAAAGCGGGCTTCTCTTGAAAGGAAAGCCGGTCATTTTTGAATGTGGTCCTTCTTGTAGTTGTCCGCCTCATTGTCGGAACCGTGTTACACAAAAAGGGCTTAAACATAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCATTGGACCTTATTCAAGCTGGTGCATTTATATGCGAGTACACTGGGGTTGTTTTGACAAGGGAGCAATCAGAAATTATGACCATGAGTGGTGATTCATTAATATATCCGAACCGTTTTTCGAACAGGTGGACGGAATGGGGTAATTTATCTCTGATTCAAGATGGTTATGTGCCTCCTTCGTATCCATCAATTCCTCCTTTGGATTTTTCTCTTGATGTGTCCAGAATGAGGAATGTGGCTTGCTATATAAGTCATAGCTCAACTCCTAATGTGATGGTTCAGTTTGTTTTGTATGATCATAATAATTTGATGTTCCCTCACATTATGCTGTTTGCAATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGATTATGGTGTAGCTGATGATGAGTTGACTGGCAAGCTCGTAATATGCAACTGA 1980 0.4197 MNPHNPNQTFPSAPPGIPFPMLTPKQEPRDETIQEIQYPNLENLPNQNLNLNLSLNLDFVSQALEQPTTTTAGAGTVDAARMAEIFRRSFTEGLQRQIQNNDAVDENPNANARAIVPVSASESNYNNAPPAGEVVNVRKHKELVRMTDVGLPDQRQFRDVVRRTRMVYDSVRVLAMAEEEGNFNVRRVRSDLKASATMRSRGLWLNRDKRIVGAIPGICIGDVFLYRMELCVVGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGTSSTSGKVYVYDGLYRIIECWFDVGKSGFGVFKFKLWRIDGQAKMGSLILKEAFLLRRDPLCYKPMCVISLDISKGMERVGIRLFNDIDRCNDPMCFEYLPRATFPHFVFHESGNATGCQCEGFCGEGCFCFIKNGNDFPYSQSGLLLKGKPVIFECGPSCSCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQSEIMTMSGDSLIYPNRFSNRWTEWGNLSLIQDGYVPPSYPSIPPLDFSLDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHIMLFAMENIPPLREFSLDYGVADDELTGKLVICN* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1123 659 ProSiteProfiles Pre-SET domain profile. 441 499 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr1g1123 659 Gene3D - 194 373 IPR036987 -
Mtr1g1123 659 MobiDBLite consensus disorder prediction 1 25 - -
Mtr1g1123 659 SUPERFAMILY SET domain 387 646 IPR046341 -
Mtr1g1123 659 SMART preset_2 394 486 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr1g1123 659 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 22 655 - -
Mtr1g1123 659 SUPERFAMILY PUA domain-like 194 375 IPR015947 -
Mtr1g1123 659 MobiDBLite consensus disorder prediction 8 22 - -
Mtr1g1123 659 Pfam SAD/SRA domain 212 366 IPR003105 -
Mtr1g1123 659 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 22 655 - -
Mtr1g1123 659 Pfam Pre-SET motif 397 494 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr1g1123 659 Gene3D SET domain 374 658 IPR046341 -
Mtr1g1123 659 ProSiteProfiles SET domain profile. 502 645 IPR001214 GO:0005515
Mtr1g1123 659 Pfam SET domain 513 645 IPR001214 GO:0005515
Mtr1g1123 659 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 49 659 IPR025794 GO:0016571
Mtr1g1123 659 ProSiteProfiles YDG domain profile. 213 362 IPR003105 -
Mtr1g1123 659 SMART G9a_1 208 366 IPR003105 -
Mtr1g1123 659 SMART set_7 502 651 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1123 Mtr-Chr1 12841942 12847706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1123 158 647 Su(var)3-9 homologs AT5G04940 38.889 2.90e-104 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr1g1123 SAD_SRA 9.7e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1123 K11420 - gmx:100804592 879.011