Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1120 ATGAAACCCGAGTTATACGAAATTTCCGACGACGAATGGGAGAATCATTCTTTCAAACCCTCACGTGTTTTAAAACGACCTCGTTCTCCTCCTCCGCCTCTCGAATCTTTCTATTATAAACCACCGCAACCACCTCCTCCTCCTCCTTCTTCTGTGACCGTTTCTGACGACGACGATTGTGTCGAAATAACGCGAAATACCGATAATATCCTTGATGAATTAGATGATGCTGAATGTGATGCGGCGGCTGCTGCTCCGGCAGCGAAACCTGGACGGAGGTTTATTATAGATGATGAGGATGAAGAGGATGCCGGAGGTAGTGGTGGTGTGGATTTGTATGAGATTGATTCAACTGAAGATGAAATTGAGGAAGATATTGAAGACGCAAATGAAGATGATTTGGTTGGTAAAGCTTTGCAAAAGTGTGCGAGGATTTCGGTGGAGTTGAAAGGGGAGTTGTTTGGTTCTTCTGGTGCGGTTTGTGATAGGTATTCTGAAGTTGAATCTTCTTCGGTTAGAATTGTTACTCAGGATGATGTTGATGTTGCTTGTGGTTCTGAGGATTCGGATTTTCAACCGTTGTTAAAGCCGTATCAGCTTGTTGGTGTTAATTTTTTGCTGTTGTTGTATCGGAAGAGGATTGGAGGAGCCATATTGGCAGATGAGATGGGCCTTGGCAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCACTTGCACAACGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCGTCCTTTTCTGTCCTTCAATATCACGGGTCTGCACGCGCAGCATACTGCAAGGAGTTGAATTCCTTGTCCAAGTCAGGATTGCCTCCTCCATTTAATGTTCTTCTCGTCTGTTATTCACTTTTCGAACGACACAGTGCACAGCAGAAAGATGATCGCAAAATCCTGAAGCGTTGGAAGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAATGCGAACCAACGCTTGATGCTGACAGGGACGCCTCTTCAAAATGATCTACATGAGTTATGGTCTATGTTGGAGTTTATGATGCCAGATATTTTTGCTTCTGAAGATGTTGACTTAAAAAAGTTACTTGGTGCAGAAGATAAAGATTTAACTAGTCGTATGAAGTCTATATTAGGGCCATTTATTTTACGCCGCCTGAAATCTGATGTGATGCAGCAACTTGTTCGAAAAACACAGAAGGTTCAATATGTCATAATGGAAAAGCAACAGGAACATGCTTACAAGGAAGCCATCGAGGAGTATCGTGCTGTTTCACAAGCTCGGTTAACAAAATGTTCTGATCTGAACCCAAAAAATGTTCTTGAAGTTCTACCTCGACGGCAAATAAATAACTATTTTGTTCAGTTCCGCAAGATTGCGAACCATCCCTTGTTGATAAGGCGAATTTATAATGATGAGGATGTTGTTCGCTTTGCTAGGAAGTTACATCCAATAGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATAGAGGAACTTAAAAGTTACAATGACTTCTCCATTCACCGGCTTTTACTTAATTATGGTACCAATGATAGAAAGGGGATCCTATCAGATAAACATGTTATGCTTTCTGCGAAATGTCGGGCTTTAGCGGAACTTCTTCCATCACTAAAGAAGAGTGGTCACCGTGTTTTGATCTTTAGTCAATGGACATCAATGCTTGATATATTGGAGTGGGCTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGCACACAGGTAGCAGAGAGGCAAACAATAGTCGACACATTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCAACTAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCTGATACGGTTGTGATTCACGACATGGATTTTAACCCACAGATTGATAGACAAGCAGAAGATCGTTGCCATCGAATTGGTCAAACAAAGCCTGTAACCGTATACAGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCAAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTAGAATCCATGGAAGAGATCAAAGAAGGGGACATGCCTGAGAAGACGATGGGAGAGATATTGTCCGCAATTTTGTTAAATTATTGA 2238 0.4191 MKPELYEISDDEWENHSFKPSRVLKRPRSPPPPLESFYYKPPQPPPPPPSSVTVSDDDDCVEITRNTDNILDELDDAECDAAAAAPAAKPGRRFIIDDEDEEDAGGSGGVDLYEIDSTEDEIEEDIEDANEDDLVGKALQKCARISVELKGELFGSSGAVCDRYSEVESSSVRIVTQDDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPASVLENWERELKKWCPSFSVLQYHGSARAAYCKELNSLSKSGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSMLEFMMPDIFASEDVDLKKLLGAEDKDLTSRMKSILGPFILRRLKSDVMQQLVRKTQKVQYVIMEKQQEHAYKEAIEEYRAVSQARLTKCSDLNPKNVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVVRFARKLHPIGAFGFECTLDRVIEELKSYNDFSIHRLLLNYGTNDRKGILSDKHVMLSAKCRALAELLPSLKKSGHRVLIFSQWTSMLDILEWALDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTVYRLVTKGTVDENVYEIAKRKLGLDAAVLESMEEIKEGDMPEKTMGEILSAILLNY* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1120 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 421 IPR027417 -
Mtr1g1120 745 Pfam Helicase conserved C-terminal domain 571 683 IPR001650 -
Mtr1g1120 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 386 IPR014001 -
Mtr1g1120 745 Pfam SNF2-related domain 213 501 IPR000330 GO:0005524|GO:0140658
Mtr1g1120 745 MobiDBLite consensus disorder prediction 25 52 - -
Mtr1g1120 745 PANTHER SNF2/RAD54 HELICASE FAMILY 81 742 - -
Mtr1g1120 745 CDD DEXHc_Snf 195 388 - -
Mtr1g1120 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 725 IPR027417 -
Mtr1g1120 745 CDD SF2_C_SNF 561 694 - -
Mtr1g1120 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 574 741 IPR001650 -
Mtr1g1120 745 Gene3D - 555 739 IPR027417 -
Mtr1g1120 745 Gene3D - 195 430 IPR038718 -
Mtr1g1120 745 SMART helicmild6 600 683 IPR001650 -
Mtr1g1120 745 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 81 742 - -
Mtr1g1120 745 MobiDBLite consensus disorder prediction 18 57 - -
Mtr1g1120 745 SMART ultradead3 191 396 IPR014001 -
Mtr1g1120 745 Gene3D - 431 507 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1120 Mtr-Chr1 12801497 12811804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1120 216 734 RAD5 or RAD16-like Gene Family AT5G22750 26.183 9.83e-46 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr1g1120 SNF2_N 3.2e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1120 K14439 - gmx:100806323 1221.84