Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1119 ATGGCTGCTGCTTCATCATCTACACCTTTCTTGGAAATCAGACAAGAAAATCAAAGTCAGATTACTCAACAACATCAATCTTCCACAGATGCTTCATCAACTGCTGCTCAACCTTTAGTTCCTCAGAAAAAAAGAAGAAATCAACCTGGAACACCATATCCAGATGCAGAGGTGATAGCACTATCTCCAAAGACCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGGGAGCAAAATTTACAACTACATAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCAGAACCAACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGGGAGTATAGATGTGACTGTGGCACTCTCTTCTCAAGGCGTGATAGTTTCATCACTCATAGAGCATTTTGTGATGCACTAGCACATGAAAATGCAAGACACCCTTCAAACATGAACCCTTTGGCAACTCATCTATTTTCCACAAACCACATGAGTTTAGGTCTATCCCAAATAAGCACCCAACAAGGAGCCACAAACAACAACATATTAAGCCTAGGTAACATTCCTTGTACACCAAAATATGAACATCATTTAATCTCACCTTTACATCAATCTTCATCATCATCATTTGGTCAACAACAACAACAACAATCAATGTCTTCCTCACCTTTCTTCATCACTGATCCAAATCAAACTTTCCAACAAGACCTTCATCAAGGACAATTCTCAAACAAACAACTTCATCTTCATCATGGTCTCATGCAACTTCCTGATCTTCAAGGAAATACCAATAACAACACAACTTCTTCGTCGGTATCGCCTTTTAACCTAAGCTTCTTTCCAAATACCAATGGTAACAACACAATGCATGATCAATTCAACAACATAAGTGAATCTCATCATCATCAACATCATGAAGGTTTTTCTTCACTCTTTGGTAATTCATCAATGCAACAACAAGAGAACATGTTGTCTTCGCCACACATGTCGGCAACTGCATTGCTTCAAAAAGCTGCTCAAATTGGTTCAACAACAACAACTATCAACAATAACAATGGTGTAGAATCTGATGAACAACATCAACATCTACATGGATTGATGAACTCTCTTGGGAATGGAAACACTTCAATATATGATAACAATAACCTTGGTCAGTTTCACAATGTTGAGGATGAGAATAAAAAGATGTCATCGTCACAACAAAGTCTAGTTGGTAATTTGTGCTTTGGAGGATCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAATATGAATACTACAAGTGGTGGAGGATTTTCACAAAGAGAACAGCAACTACACTCCATGAGTGCAATGAACAACATGGATCCTAAATTGGAATCAACACAAGGAAATCAACCTTTTTGA 1578 0.3796 MAAASSSTPFLEIRQENQSQITQQHQSSTDASSTAAQPLVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHMSLGLSQISTQQGATNNNILSLGNIPCTPKYEHHLISPLHQSSSSSFGQQQQQQSMSSSPFFITDPNQTFQQDLHQGQFSNKQLHLHHGLMQLPDLQGNTNNNTTSSSVSPFNLSFFPNTNGNNTMHDQFNNISESHHHQHHEGFSSLFGNSSMQQQENMLSSPHMSATALLQKAAQIGSTTTTINNNNGVESDEQHQHLHGLMNSLGNGNTSIYDNNNLGQFHNVEDENKKMSSSQQSLVGNLCFGGSDKLTLDFLGVGGMVRNMNTTSGGGFSQREQQLHSMSAMNNMDPKLESTQGNQPF* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1119 525 MobiDBLite consensus disorder prediction 1 56 - -
Mtr1g1119 525 Gene3D Classic Zinc Finger 126 205 - -
Mtr1g1119 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Mtr1g1119 525 MobiDBLite consensus disorder prediction 1 41 - -
Mtr1g1119 525 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Mtr1g1119 525 SMART c2h2final6 113 143 IPR013087 -
Mtr1g1119 525 SMART c2h2final6 148 168 IPR013087 -
Mtr1g1119 525 SMART c2h2final6 72 94 IPR013087 -
Mtr1g1119 525 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 406 - -
Mtr1g1119 525 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 413 501 - -
Mtr1g1119 525 Gene3D Classic Zinc Finger 55 120 - -
Mtr1g1119 525 MobiDBLite consensus disorder prediction 261 281 - -
Mtr1g1119 525 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Mtr1g1119 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 406 - -
Mtr1g1119 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 413 501 - -
Mtr1g1119 525 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1119 Mtr-Chr1 12784760 12789941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1119 42 496 IDZ Gene Family AT2G02070 47.002 9.66e-123 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g1119 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1119 K25870 - gmx:100806198 648.277