Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1118 ATGGCAACATCATTTTCAGCTGCATCTTTCTTTACAATCTCACAAGAGGATCAGAATCAGATGAATCAACAGAATTCATCAACACCTTCATCATCAACAACTCCAACTGCACCACCTCAGAAGAAAAGGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAAGTGATAGCACTATCTCCCAAGAGCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGCCAAAAAGGGTTCCAAAGGGAGCAAAATTTACAACTACATAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCAGAACCAACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGAATTAAGAAACACTATTTTAGAAAGCATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACTTGTGGTACTAAGGAGTATAGATGTGACTGTGGCACTCTCTTCTCCAGAAGAGACAGTTTCATCACACACAGGGCTTTTTGTGATGCACTTGCTCAAGAAAGTTCAAGACAACCACATCCAAACCTAATCACCAACACTTCCATTAATAACTCCCAACTATTTCGAAATATTAGTAACAACAACAATAACATGTCCTTAGCCTTGTCTCAAATTCCTCAACAACATATCTCTTCCATTCATGGCCAAAACGACAACAATCAAACTAGTGAAATCTTGCGTTTTGGCAACGCAAGAACTGCACAATTTAACAACATTCTATCCCCACCCCCACAACAAACTCTTCAAACCCCTCCATTTAATTTCATCACACAACAAAACCAAAATTACCATCATGACCAATCACAATTCCAAGGATTAATATCATTGTCTGAACTCAACAACAACAACATGTTTTCTGAAAACTTCAACAATGAAGGGTCAAATGATTTCTTCTCAGAAAATTCTATAATGTTTGATCATAATAACCAAACAAACCCTATCTCTCCTCACATGTCAGCAACTGCTTTGCTTCAAAAAGCTTCTCAAATGGGTGCAACTTCAAGCACCACCACCACCAACAATACTTCTTCTTCAATACTAAGAAGCTTTGGTCATGTTTCTTCTTCTGCAGCAACAAAAGTTAATGGTGCTGGTGATGGACTCACAAGGGATTTTCTTGGAGTTGGTCAAATAGTTATGAGAAACATGAATGGAGGAGTTGGTCAAAGAAGTCAACGTAACTTCAACTTGGAATCAGAGAATAATGGAAATATTGGTGGTGGAGGGAACTTTGAGTGA 1338 0.3871 MATSFSAASFFTISQEDQNQMNQQNSSTPSSSTTPTAPPQKKRRNQPGTPNPDAEVIALSPKSLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYFRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESSRQPHPNLITNTSINNSQLFRNISNNNNNMSLALSQIPQQHISSIHGQNDNNQTSEILRFGNARTAQFNNILSPPPQQTLQTPPFNFITQQNQNYHHDQSQFQGLISLSELNNNNMFSENFNNEGSNDFFSENSIMFDHNNQTNPISPHMSATALLQKASQMGATSSTTTTNNTSSSILRSFGHVSSSAATKVNGAGDGLTRDFLGVGQIVMRNMNGGVGQRSQRNFNLESENNGNIGGGGNFE* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1118 445 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Mtr1g1118 445 MobiDBLite consensus disorder prediction 1 47 - -
Mtr1g1118 445 Gene3D Classic Zinc Finger 51 118 - -
Mtr1g1118 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Mtr1g1118 445 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Mtr1g1118 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 392 - -
Mtr1g1118 445 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Mtr1g1118 445 SMART c2h2final6 146 166 IPR013087 -
Mtr1g1118 445 SMART c2h2final6 70 92 IPR013087 -
Mtr1g1118 445 SMART c2h2final6 111 141 IPR013087 -
Mtr1g1118 445 Gene3D Classic Zinc Finger 124 204 - -
Mtr1g1118 445 MobiDBLite consensus disorder prediction 1 55 - -
Mtr1g1118 445 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 392 - -
Mtr1g1118 445 MobiDBLite consensus disorder prediction 423 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1118 Mtr-Chr1 12757880 12763219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1118 40 205 IDZ Gene Family AT2G02070 91.566 3.61e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g1118 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1118 K25870 - gmx:100807789 434.106