Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1110 ATGGAAAAAGTAGCTCCTCCTCTTCTTCCTCTTCATCCTCCTATGTTATCATCACATCAATTTTACGATTCATCAAACACCAAAAAACGTGATCTATTATCATCATACGACGTCGTTCACATCCCAAACGATAATTGGAACCCTAAAGAATGGAATTGGGACAGTATCCGTTTCATGACAGCAAAATCAACAACAGTAGAACCACAACAGGTCGAAGAATCTCTAAACTTAAATCTCGGAAGCACGGGACTCGTACGACCAAACAAACGAATCCGTTCAGGATCTCCAACATCGGCTTCATATCCGATGTGTCAAGTTGATAACTGCAAAGAAGATCTATCAAAAGCGAAGGATTATCATCGTCGTCATAAGGTGTGCGAAGCTCATAGTAAAGCTTCTAAGGCTTTGTTAGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCGTTGGTGGAGTTTGATGAAGGGAAACGGAGTTGTAGACGGAGACTTGCTGGTCATAATCGGCGTAGGAGGAAAACGCAGCCGGATGAAGTGGCGGTTGGAGGTTCGCCGCCGTTGAATCAGGTTGCTGCTAATTTGGAGATTTTTAACTTGTTGACTGCTATTGCTGATGGTTCTCAAGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGATAAAGAGCAGCTTGTACAAATTCTGAATAGGATCCCTTTACCTGCTGATCTTACTGCAAAGTTGCTGGATGTTGGTAATAATTTGAATGCGAAAAATGATAATGTCCAAATGGAAACTTCACCCTCCTATCATCATCGCGATGATCAACTGAACAATGCCCCCCCTGCCCCGTTAACTAAGGATTTTCTTGCTGTTCTTTCCACGACTCCATCCACACCTGCTCGAAATGGCGGCAACGGGTCCACAAGTAGTGCCGATCATATGAGAGAAAGAAGCAGCGGCAGCTCTCAGTCTCCAAATGATGATTCAGATTGCCAGGAGGATGTTCGAGTTAAATTGCCGCTGCAACTTTTTGGCTCCTCTCCAGAAAACGACAGCCCGTCTAAATTGCCATCTTCGCGAAAGTATTTTTCATCGGAAAGTAGTAATCCTGTGGACGAAAGGACGCCGTCGTCATCTCCTCCTGTTGTGGAGATGAATTTTGGTTTGCAAGGTGGGATTAGAGGTTTCAATTCTAATTGTATTTCCACTGGATTTGGAGGCAATGCAAATAAGGAAACTAGCCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGTTCAAAATCTAATAACATGATTCAACAATCTAGTTCAGTTCAAAGTGTTCCATTTAAAGCTGGTTATGCATCTTCAGGCTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGATCGTACTGGGAGAATAATGTTTAAATTGTTTGACAAGCATCCTAGCCATTTCCCAGGAACGCTGCGAACACAGATTTACAATTGGCTTTCTACACGGCCATCAGACTTGGAGAGTTACATAAGGCCCGGCTGTGTTGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGCTTGGGTGCAATTAGAAGAAAACTTCCTCCAACGTGTTGATTCTTTAATTCATAACTCAGATTCTGATTTCTGGAGAAATGGAAGATTTCTTGTTTATTCTGGCAGTCAGTTAGCATCACACAAAGATGGAAGGATACGCATGTGCAAACCATGGGGAACATGGAGGTCTCCAGAGTTGATATCAGTGTCTCCTTTGGCAATTGTTGGTGGACAGGAGACTTCTATTTCATTGAAGGGAAGAAACCTGTCTGCTCCTGGCACAAAGATTCATTGCACTGGTGCTGACTGTTATACATCGTCAGAAGTTATAGGATCAGGAGATCCTGGTATGGTCTATGATGAGATAAAATTGAGTGGTTTTGAAGTTCAGAATACATCTCCTAGTGTTCTAGGTCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGAAACAGTTTTCCAGTGATAATAGCCAATGCGTCCATTTGCAAGGAGTTGAGACCGCTTGAGTCTGAATTTGACGAGGAGGAAAAAATGTGTGATGCCATTTCAGAGGAGCATGAACATCATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCACTTTTTGAATGAGCTTGGTTGGCTGTTTCAAAGGGAAAGGTTCTCGAATGTGCACGAGGTTCCAGATTATTCGCTCGACAGGTTCAAATTTGTACTGACGTTTTCTGTGGAAAGAAACTGTTGCATGTTGGTCAAAACCCTTCTGGATATGCTGGTTGATAAACACTTCGAAGGAGAAGGGTTGTCAACAGGGTCAGTGGAGATGCTGAAAGCAATCCAACTTCTAAATAGAGCAGTGAAAAGAAAGTGCACAAGCATGGTTGATTTGCTCATTAACTATTCTATAACTAGCAAAAATGACACATCCAAGAAATATGTATTTCCACCGAATCTTGAGGGCCCTGGTGGCATTACTCCCTTGCATTTGGCAGCATCTACAACGGATTCTGAGGGTGTAATTGACTCTTTAACAAATGATCCACAGGAGATTGGGTTGAAGTGCTGGGAAACCCTTGCGGATGAAAACGGGCAGACTCCACATGCCTATGCCATGATGAGAAATAATCACTCTTATAATATGTTGGTTGCTCGTAAATGTTCCGATAGACAAAGAAGTGAAGTTTCAGTTAGAATTGATAATGAGATAGAGCACCCATCACTGGGAATTGAGCTAATGCAAAAGCGAATTAACCAAGTCAAACGAGTTGGGGACTCCTGTTCCAAGTGTGCAATTGCAGAAGTTCGCGCCAAAAGAAGATTTTCCGGTTCACGGAGCTGGCTTCACGGTCCCTTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTATTCCGTGGAACCCCTTATGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGAATTATGGCACAATGTAA 3012 0.4263 MEKVAPPLLPLHPPMLSSHQFYDSSNTKKRDLLSSYDVVHIPNDNWNPKEWNWDSIRFMTAKSTTVEPQQVEESLNLNLGSTGLVRPNKRIRSGSPTSASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLVEFDEGKRSCRRRLAGHNRRRRKTQPDEVAVGGSPPLNQVAANLEIFNLLTAIADGSQGKFEERRSQVPDKEQLVQILNRIPLPADLTAKLLDVGNNLNAKNDNVQMETSPSYHHRDDQLNNAPPAPLTKDFLAVLSTTPSTPARNGGNGSTSSADHMRERSSGSSQSPNDDSDCQEDVRVKLPLQLFGSSPENDSPSKLPSSRKYFSSESSNPVDERTPSSSPPVVEMNFGLQGGIRGFNSNCISTGFGGNANKETSQSHSCTTIPLDLFKGSKSNNMIQQSSSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSTRPSDLESYIRPGCVVLSIYASMSSAAWVQLEENFLQRVDSLIHNSDSDFWRNGRFLVYSGSQLASHKDGRIRMCKPWGTWRSPELISVSPLAIVGGQETSISLKGRNLSAPGTKIHCTGADCYTSSEVIGSGDPGMVYDEIKLSGFEVQNTSPSVLGRCFIEVENGFKGNSFPVIIANASICKELRPLESEFDEEEKMCDAISEEHEHHFGRPKSRDEALHFLNELGWLFQRERFSNVHEVPDYSLDRFKFVLTFSVERNCCMLVKTLLDMLVDKHFEGEGLSTGSVEMLKAIQLLNRAVKRKCTSMVDLLINYSITSKNDTSKKYVFPPNLEGPGGITPLHLAASTTDSEGVIDSLTNDPQEIGLKCWETLADENGQTPHAYAMMRNNHSYNMLVARKCSDRQRSEVSVRIDNEIEHPSLGIELMQKRINQVKRVGDSCSKCAIAEVRAKRRFSGSRSWLHGPFIHSMLAVAAVCVCVCVLFRGTPYVGSVSPFRWENLNYGTM* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1110 1003 ProSiteProfiles Zinc finger SBP-type profile. 101 178 IPR004333 GO:0003677
Mtr1g1110 1003 SUPERFAMILY SBT domain 102 183 IPR036893 GO:0003677|GO:0005634
Mtr1g1110 1003 MobiDBLite consensus disorder prediction 343 381 - -
Mtr1g1110 1003 Gene3D - 94 165 IPR036893 GO:0003677|GO:0005634
Mtr1g1110 1003 Pfam SBP domain 104 177 IPR004333 GO:0003677
Mtr1g1110 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 313 1003 IPR044817 GO:0003677
Mtr1g1110 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 300 IPR044817 GO:0003677
Mtr1g1110 1003 MobiDBLite consensus disorder prediction 288 326 - -
Mtr1g1110 1003 Gene3D - 748 909 IPR036770 -
Mtr1g1110 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 313 1003 - -
Mtr1g1110 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 36 300 - -
Mtr1g1110 1003 MobiDBLite consensus disorder prediction 255 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1110 Mtr-Chr1 12640146 12646302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1110 16 1003 SBP-box Gene Family AT1G20980 49.859 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr1g1110 SBP 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1110 - - gmx:100819004 1396.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1110 1 12640146 12646302 Mtr1g1110 1 12640146 12646302 ECH