Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1086 ATGCCTCCTCGTCCTTCTTTTCACAAGCTCATTCTCCCTTCATCCCTTCAAACTAGACAATTGAGGATTCCAGATAATTTTCTTAGGAAATATGGGGCCCAGCTTTCGACTATTGCAACCCTCACTGTTCCTGATGGCACTGTCTGGCGTCTAGGATTGAAAAAGGTTGACAACCGAATTTGGTTTGTCGATGGCTGGCAAGATTTTGTTCAACGTTACGCCATTGGCATTGGATACTTTCTAGTATTCACTTATGAAGGAAATTCAAATTTCATTGTTCATATCTTTAATATGAGTACTGCTGAGTTAAACTATCAATCAGCCATGAGAAGCCGTACTGAAGGGCCTTGCTATGCAAATTATCATCCTATTTTTGAAGACATTGAAGATATCGACTCCTTTGAATTCCTGGATTCATCACCTTCAAACCTTACTCCTGGTGCATTGCAAGACAAGGTTTTTAGTGGATCTTTGGATCAACTGACACCAGCGAAGAATCATACTCCATCATTGCAGAATTTGTTTAATGGGGGGTCTAAACTCAACCACGTTAACTGGGGAGATATCGGTGGTACTCTTTCTTCAAAGAGTGCCATTCAGTCAACCAGAGATATAGGTGTTCAGTTCAATGCTAATGAGTTTAAAAAGTCCACTGAAGGATTGAAATTGCGCTATCCTAACGAGGAAGGGGTTAATAATACTGATACTAAGAAAACATCAAGAAAGAAGCGGAAATCAGATCCAAGTGCACAGGAAGCCACTGCTGAAAATGACGAGGAGGCAGAGCGGTATCGATTCTATGAAAGTGCGTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGAGTCGAAGACATTTGAACCAACTAATCCATTCTGTCGAGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGTATAATGTATTTGCCTTCCTGCTTTGCAGAAAAGAATTTGAACGGTGTTTCAGGATTCATTAAGCTTCAGATCTCCGATGGGAGACAGTGGCCTGTTCGCTGCCTTTATAAAGGAGGCCGGGCAAAGTTAAGCCAAGGATGGTATGAGTTTACATTAGAGAACAATTTAGGGGAAGGCGATATCTGTGTTTTCGAGCTGCTTAGAACCAGAGAGGTAGTCCTGCAAGTTACTTTGTTTCGTGTAAAAGAGGACGACTCAGGGTTATTCAACCCTTCTACACTGCCGAGCCAAAATGTGAGCCATGCAAAAATGTTGAATCCTCACTTGCAGCACCGTGTTAGCTCAACCAAATCAGCTAAAAATTAG 1302 0.4178 MPPRPSFHKLILPSSLQTRQLRIPDNFLRKYGAQLSTIATLTVPDGTVWRLGLKKVDNRIWFVDGWQDFVQRYAIGIGYFLVFTYEGNSNFIVHIFNMSTAELNYQSAMRSRTEGPCYANYHPIFEDIEDIDSFEFLDSSPSNLTPGALQDKVFSGSLDQLTPAKNHTPSLQNLFNGGSKLNHVNWGDIGGTLSSKSAIQSTRDIGVQFNANEFKKSTEGLKLRYPNEEGVNNTDTKKTSRKKRKSDPSAQEATAENDEEAERYRFYESASARKRTVTAEERERAINESKTFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQISDGRQWPVRCLYKGGRAKLSQGWYEFTLENNLGEGDICVFELLRTREVVLQVTLFRVKEDDSGLFNPSTLPSQNVSHAKMLNPHLQHRVSSTKSAKN* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1086 433 Coils Coil 250 270 - -
Mtr1g1086 433 SUPERFAMILY DNA-binding pseudobarrel domain 292 393 IPR015300 -
Mtr1g1086 433 CDD B3_DNA 5 97 IPR003340 GO:0003677
Mtr1g1086 433 PANTHER B3 DOMAIN-CONTAINING 4 424 - -
Mtr1g1086 433 CDD B3_DNA 297 392 IPR003340 GO:0003677
Mtr1g1086 433 ProSiteProfiles B3 DNA-binding domain profile. 299 394 IPR003340 GO:0003677
Mtr1g1086 433 Gene3D - 276 396 IPR015300 -
Mtr1g1086 433 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 4 424 - -
Mtr1g1086 433 Gene3D - 2 100 IPR015300 -
Mtr1g1086 433 SMART B3_2 299 394 IPR003340 GO:0003677
Mtr1g1086 433 SMART B3_2 7 99 IPR003340 GO:0003677
Mtr1g1086 433 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Mtr1g1086 433 MobiDBLite consensus disorder prediction 220 261 - -
Mtr1g1086 433 Pfam B3 DNA binding domain 9 97 IPR003340 GO:0003677
Mtr1g1086 433 Pfam B3 DNA binding domain 302 392 IPR003340 GO:0003677
Mtr1g1086 433 MobiDBLite consensus disorder prediction 234 261 - -
Mtr1g1086 433 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1086 Mtr-Chr1 12389305 12393183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1086 3 399 B3 DNA Binding Superfamily AT3G18990 50.750 2.91e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1086 B3 1.1e-16 CL0405