Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1085 ATGCCTCTTCTTCCTTCTTTCCACAAGCTCATTTTTCCAACAACCCTTCAATCTAAGCAATTGAGGATTCCGGATAATTTTCTGAGGAAACATGGGGACCAACTTTCGACTGTCGCAACCCTCACTATTCCTGGCGGCTCCGTCTGGCGTCTAGGATTGAAAAAGGTTGACAACAGTATTTGTTTTGTGGATGGCTGGCAAGATTTTGTTCAACGCTACTCAATTGGCATTGGATACTTACTGGTATTCATATACGAAGGAAGGTCAAATTTCATCATTCATATCTTCCGTACTGCTGAGTTAAACTATGATTCAACAATGAAAAGCCGGACTGAAGGGCCTTTCTATGAAGCCTATAATTATGTTTTTGAAGGCATTGAAGATATCGACTCCTTTGATTTCCTGGATTCAGCACCTTCAAACCCTACTGGTGCATTGCAAGGCAAGGATTCTACTGGATGTATGGATCAACTGATACCAGCGGATAATCATATCCAAAAAAGACAAGAAAATAAGGATACCAAGAAAACTTCAAGAAAGAAGCGGGGATCGCGGAAATCAGATCCGAGCGCACAGGAAGCCTCCACTGAAAATGATGAGGAGGCAGAGCGCAAGCGAGACACCAAGAAAACTTCAAGAAAGAAGTGGAAATCGCGGAAATCAGATCTGAGTGCACAGGAAGCCTCCACTGAAAATGACGAGGAGGCAGAGCGCAAGCGAGACACCAAGAAAACTTCAAGAAAGAAGCGGAAATCAGATCTAAGTGCACAGGAAGCCTCCACTGAAAATGATGAGGAGGCAGAGCGCAAGCGAGACACCAAGAAAACTTCAAGAAAGAAGCGGAAATCAGATCTGAGTGCACAGGAAGCCTCCACTGAAAATGTAGCCTATGAAAGTGCGTCTGCAAGAGTAAGACACAATGTGTCAGATGAAGAAAGAGAAAGGGCAATGAATGAGGCTAATGCATTTGAACCAACTAATCCTTACTGTCGTGTTAGTCTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCTACCAAATTTCGAGCAAATTTGAAGGGTGTTTCAGGTTTTATACCGCTTCAGACATCTGATGGTGAGAAACAGTGGCGTGTTCGCTGCCTTGATAATGAAGGCCGGATAAAGTTAAGCCAAGGATGA 1170 0.4359 MPLLPSFHKLIFPTTLQSKQLRIPDNFLRKHGDQLSTVATLTIPGGSVWRLGLKKVDNSICFVDGWQDFVQRYSIGIGYLLVFIYEGRSNFIIHIFRTAELNYDSTMKSRTEGPFYEAYNYVFEGIEDIDSFDFLDSAPSNPTGALQGKDSTGCMDQLIPADNHIQKRQENKDTKKTSRKKRGSRKSDPSAQEASTENDEEAERKRDTKKTSRKKWKSRKSDLSAQEASTENDEEAERKRDTKKTSRKKRKSDLSAQEASTENDEEAERKRDTKKTSRKKRKSDLSAQEASTENVAYESASARVRHNVSDEERERAMNEANAFEPTNPYCRVSLRPSYLYRGCIMYLPTKFRANLKGVSGFIPLQTSDGEKQWRVRCLDNEGRIKLSQG* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1085 389 MobiDBLite consensus disorder prediction 140 311 - -
Mtr1g1085 389 MobiDBLite consensus disorder prediction 218 242 - -
Mtr1g1085 389 CDD B3_DNA 5 97 IPR003340 GO:0003677
Mtr1g1085 389 Pfam B3 DNA binding domain 9 98 IPR003340 GO:0003677
Mtr1g1085 389 MobiDBLite consensus disorder prediction 251 273 - -
Mtr1g1085 389 SUPERFAMILY DNA-binding pseudobarrel domain 5 98 IPR015300 -
Mtr1g1085 389 SUPERFAMILY DNA-binding pseudobarrel domain 325 389 IPR015300 -
Mtr1g1085 389 Coils Coil 191 211 - -
Mtr1g1085 389 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 4 389 - -
Mtr1g1085 389 Gene3D - 307 389 IPR015300 -
Mtr1g1085 389 SMART B3_2 7 99 IPR003340 GO:0003677
Mtr1g1085 389 Coils Coil 256 276 - -
Mtr1g1085 389 MobiDBLite consensus disorder prediction 163 177 - -
Mtr1g1085 389 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Mtr1g1085 389 PANTHER B3 DOMAIN-CONTAINING 4 389 - -
Mtr1g1085 389 Coils Coil 225 245 - -
Mtr1g1085 389 Gene3D - 4 100 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1085 Mtr-Chr1 12371140 12383165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1085 5 389 B3 DNA Binding Superfamily AT3G18990 36.528 9.23e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1085 B3 8.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1085 - - mtr:MTR_1g034210 536.569