LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g1083	ATGGCTCCATCACAAGCTCCGGCTCTATCACCAACACCATTATTCTCTTTTGATATCGGTCATTCTCCCGCTTCATCACCTGTAATCGAAAGTGGAAATGGTGGTAATAATAAGAACAATGATGATAACAATTATCATTCTCCTGCTGCATCACCTGTAATCGCTCCTGCTGCATCACCTGTAATCGAAAGTGGAAATGGTGGTAATAATAATAACAATGATGATAACAATTATCATTCTCCTGCTGCATCACCTGTAATCGCTCCTGCTGCATCACCTGTAACTGTAATCGAAAGTGGAAATGGTGGTAATAATAATAACAATAATGATAACAATTATCATTCTCCTGCTGCATCACCTGTAATCACTCCTGCTGCATCACCTGTAATCGAAAGTGGAAATGGTGGTAATAATAATAACAATGATCATTCTCCCGCTGCATCACCTGTAATCGAAAGTGGAAATGGTGGTAATAATAATAACAATGATGATGACAATGATCATTCTCCCGCTTCATCATCTGTAATCGAAAGTGGAAATGGTGGTAATAACAATAACAATGGTGGTAATAATAATAACAATGATGATAGTGTCACAAGTTTTCCTGCCACAAATTTTCCTAATGAGAGGCTAAAACATGCTTATGTTGCATTTCAAGCATGGAAAGATGCTATTCATTCTGACCCTTTTAACACAACTGGTAATTGGGTTGGTACTGATGTTTGTTCTTACACTGGTGTCTTTTGTGCTCCTGCTCTTGATGATCCTAAATTGAATGTTGTAGCCGGTGTCGATCTTACTCACGCCGACATTGCTGGTCACCTTCCAGAAGAGTTAGGCCTATTGAAAGATGCTGCTCTTTTCCATGTTAACTCAAACAGATTCTGTGGTATTATTCCAGAGAGCTTTAAAAATCTCACCCTTATGCATGAGTTTGATATCAGTAACAACCATTTCGTCGGCAATTTTCCTTCTGTGGTACTCACATGGCCAGGTTTGAAGTACTTGGATATTAGATTCAATGACTTTGAAGGATGTTTACCTCATGAGCTCTTTGAGAAAGAACTTGACGCAATATTTTTAAACAATAACCGTTTTACATGTGGTATACCAGAAACACTTGGAAAATCAAAAGCCTCTGTTGTGACTTTTGCTAACAACCAATTCACAGGTTGTATTCCAAAATCAATTGGAAACATGGCGAACTTGAATGAAATTGTTTTATTGGGAAATGGTCTTGGTGGTTGTTTTCCACAAGAGCTTGGTATGTTAGGGAATATAGTTGTTTTGGATGTTAGCCAAAATGGGTTTGTTGGGACACTACCAAATTTGTCAGGATTGAAGAATGTTGAGGTTATTGACATTACACATAACAAGCTTAGTGGATATGTTTCCAACACTATTTGCCAGCTACCTATGTTGACTAACTTCACATTTTCTGATAATTACTTCAATGGAGAAGCTCAAACTTGTGTTCCTTCTAGTAATCCTAATGTTGTATTTGATGATGCCAATAACTGTTTACCTGGAAGGAAAGATCAAAAGACATCAAAGGAATGCTTACCAGTTTTGACCAAACATGTGGATTGTAGCCAACACTGTGGTGGAGGAGCTCCTAAGCAAGAGACACCAAAGGTTCAACCACCACTTCCACCAACACTTCCACCAGTTGAGGATATTCCACCAACAAGAGCACCAGTTGAGGACATTCCACCTACGCTTCCGCCAGTTGAGGATATTCCACCAACAAGGGCACCAGTTGAGGATATTCCACCAACAAGAGCACCGGTCGAGGATATTCCACCAACAAAAGCACCAGTGTCATCACCACCACCACCTGTCCACTCACCTCCTCCACCAGTCCACTCTCCACCACCCCCAGTTCACTCACCTCCTCCACCAGTTCACTCTCCCCCACCACCTGTCCACTCACCTCCTCCACCAGTCTACTCTCCACCACCACCAGTTCACTCTCCTCCCCCACCACCACCGGTGCACTCCCCTCCACCACCAGTACACTCTCCTCCTCCATCGGTCAACTCTCCACCACCACCAACATGGGATGACATCATCTTGCCACCACACATTGGAGCTGAATATAGGTCGCCTCCTCCCCCAACAATTGAAGGATACTAA	2136	0.4204	MAPSQAPALSPTPLFSFDIGHSPASSPVIESGNGGNNKNNDDNNYHSPAASPVIAPAASPVIESGNGGNNNNNDDNNYHSPAASPVIAPAASPVTVIESGNGGNNNNNNDNNYHSPAASPVITPAASPVIESGNGGNNNNNDHSPAASPVIESGNGGNNNNNDDDNDHSPASSSVIESGNGGNNNNNGGNNNNNDDSVTSFPATNFPNERLKHAYVAFQAWKDAIHSDPFNTTGNWVGTDVCSYTGVFCAPALDDPKLNVVAGVDLTHADIAGHLPEELGLLKDAALFHVNSNRFCGIIPESFKNLTLMHEFDISNNHFVGNFPSVVLTWPGLKYLDIRFNDFEGCLPHELFEKELDAIFLNNNRFTCGIPETLGKSKASVVTFANNQFTGCIPKSIGNMANLNEIVLLGNGLGGCFPQELGMLGNIVVLDVSQNGFVGTLPNLSGLKNVEVIDITHNKLSGYVSNTICQLPMLTNFTFSDNYFNGEAQTCVPSSNPNVVFDDANNCLPGRKDQKTSKECLPVLTKHVDCSQHCGGGAPKQETPKVQPPLPPTLPPVEDIPPTRAPVEDIPPTLPPVEDIPPTRAPVEDIPPTRAPVEDIPPTKAPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPPPVHSPPPPVHSPPPSVNSPPPPTWDDIILPPHIGAEYRSPPPPTIEGY*	712

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g1083	711	PANTHER	POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3	554	706	-	-
	Mtr1g1083	711	PANTHER	POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3	203	551	-	-
	Mtr1g1083	711	SUPERFAMILY	L domain-like	216	496	-	-
	Mtr1g1083	711	PRINTS	Proline rich extensin signature	543	555	-	-
	Mtr1g1083	711	PRINTS	Proline rich extensin signature	579	591	-	-
	Mtr1g1083	711	PRINTS	Proline rich extensin signature	606	627	-	-
	Mtr1g1083	711	PRINTS	Proline rich extensin signature	627	643	-	-
	Mtr1g1083	711	PRINTS	Proline rich extensin signature	644	661	-	-
	Mtr1g1083	711	MobiDBLite	consensus disorder prediction	536	711	-	-
	Mtr1g1083	711	PANTHER	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED	554	706	-	-
	Mtr1g1083	711	PANTHER	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED	203	551	-	-
	Mtr1g1083	711	MobiDBLite	consensus disorder prediction	544	690	-	-
	Mtr1g1083	711	MobiDBLite	consensus disorder prediction	1	205	-	-
	Mtr1g1083	711	Pfam	Leucine rich repeat N-terminal domain	217	249	IPR013210	-
	Mtr1g1083	711	MobiDBLite	consensus disorder prediction	130	205	-	-
	Mtr1g1083	711	MobiDBLite	consensus disorder prediction	26	47	-	-
	Mtr1g1083	711	Gene3D	Ribonuclease Inhibitor	214	508	IPR032675	-
	Mtr1g1083	711	MobiDBLite	consensus disorder prediction	63	80	-	-
	Mtr1g1083	711	MobiDBLite	consensus disorder prediction	97	118	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g1083	Mtr-Chr1	12345867	12348090	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g1083	202	532	Trihelix Transcription Factor Family	AT1G49490	66.867	1.90e-164	493

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g1083	-		-	lang:109330687	583.178