Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1066 ATGTGCATGCAGATGATACCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAGACTTCCAAACGAGTCTGAGTGCAAAATGTTTTGGGTTCAACGTGGTGATGATATTTGGCTTATGAATTGGAAAAATTTTGCACGGTCGCTTAGATGTGGAGATCTTTTAGTTTTTCAATACAATGGAGGGTCAGATTTTCATATCATTATATTAGATGATAGTAAATTAGAAATCGATTATTCAAGTATGAAATGCAACGGCGAAGAAAATTCTAACCAGGTTTGTAAACAAGAAGAGAGTGATGATGATGATTGTGTTGAGATTCCGAATGATATTGTTACTCCTGCTGCTACACCTCAAAGGACAAACATTGACAAGAGAAAAATTAATATGAATTCAACCCAACAAAAAGTCTCAGGTTCTAACAAAGGAGGCATGACGAAGAAGGCTAAGAGATGTTCAATAGCTGAAGCAAATAATAAGAAATCCAACAATAAGAATCCAAGTTTTGAACTTAAATTGACACAATTTTATGCCCAAGGAAACTTATTTAGGATACCAAGTAAGTTTTCAAGAGAATACTTGAACGAGTTCGAAGGGATTGCAAGGATTAGGGTTGGTGATGATAGAACTTGGAAGGTGAATGTGAAGTTTGATTATGCAAACAGAAGTTCTATTGTGAGTGCTGGTTGGAATTTATTTACCAAGGAAAATAACTTGCGAGTCGGTGATGTGTGTAAATTTATGATGACTCAATCTGAGCCTCTTTCTTTTTATATTTCTATTTCCCGAGCTAGAGAGGAACCAAGCCCTAGAAAATTGCAAGGATATATAAAAAGGATCTCTTCTACAGATTTAGAAGTTTCTAATGTGAGGGAACATAACACATTGGAGCTCTTTGAGAATTCCTCATACCCGGCGTCTCTGCCCGCCATAAAGAAAGATCAATGGCAAACCAAGTCGATTTCTGCCGGGACCAAAGAGACTGCATCAAGAGCCAAGAAAGAAACGCATAATATTCGACTTTCTGCCATCGACGATTACAAAGAGTGA 1068 0.368 MCMQMIPRNFVERYWKDVSNPISLRLPNESECKMFWVQRGDDIWLMNWKNFARSLRCGDLLVFQYNGGSDFHIIILDDSKLEIDYSSMKCNGEENSNQVCKQEESDDDDCVEIPNDIVTPAATPQRTNIDKRKINMNSTQQKVSGSNKGGMTKKAKRCSIAEANNKKSNNKNPSFELKLTQFYAQGNLFRIPSKFSREYLNEFEGIARIRVGDDRTWKVNVKFDYANRSSIVSAGWNLFTKENNLRVGDVCKFMMTQSEPLSFYISISRAREEPSPRKLQGYIKRISSTDLEVSNVREHNTLELFENSSYPASLPAIKKDQWQTKSISAGTKETASRAKKETHNIRLSAIDDYKE* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1066 355 CDD B3_DNA 173 269 IPR003340 GO:0003677
Mtr1g1066 355 CDD B3_DNA 2 77 IPR003340 GO:0003677
Mtr1g1066 355 SMART B3_2 175 271 IPR003340 GO:0003677
Mtr1g1066 355 SUPERFAMILY DNA-binding pseudobarrel domain 2 86 IPR015300 -
Mtr1g1066 355 SUPERFAMILY DNA-binding pseudobarrel domain 168 269 IPR015300 -
Mtr1g1066 355 Gene3D - 2 81 IPR015300 -
Mtr1g1066 355 Pfam B3 DNA binding domain 185 270 IPR003340 GO:0003677
Mtr1g1066 355 Gene3D - 151 273 IPR015300 -
Mtr1g1066 355 PANTHER B3 DOMAIN-CONTAINING 5 270 - -
Mtr1g1066 355 ProSiteProfiles B3 DNA-binding domain profile. 174 271 IPR003340 GO:0003677
Mtr1g1066 355 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1066 Mtr-Chr1 12161878 12164321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1066 6 270 B3 DNA Binding Superfamily AT3G18990 23.824 1.04e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1066 B3 7.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1066 - - mtr:MTR_6g061070 321.627