Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1040 ATGGATGTTTCTCTACCATACAAGAAAATAGGTTACTCTACCAAGAAAATAACAGTTGATCCCAAGGGGCACCATGGATGTTTCTCTACCATACAATCTGCTATTGATTCCATACCTTCAAACAATAGGTATTGGACTTCCATCAATATTAAAGAAGGCATCTACAGGGAGAAGTTGAAGATTCCTTATGATAAACCCTACATTATTATACAAGGAGCGGGGATGAGCAAGACAATAGTTGAATGGAATGACCATGCAACTACTTTACAGAGCCCTACGTTCTTCACCATGGCTGACAATATTGTGGTCAGGTTTATTAGCTTTAGGAATTCATACAATAATCCAAGAAATAGTAACCCATGGGCCCCTGCCGTAGCTGCGATGGTAAGTGGTGACAAGACTTACTTCTATAATGTCGGCTTCTTTGGTTTTCAAGACACTTTGTGGGATGATCAAGGAAGACATTACTACAAGAATTGTTTGATTCAAGGTGCTGTTGATTTCATATTTGGTGCTGGCCAGTCTATATATGAGGAGTGTTCTATATCTGTAATTGCTTCTGCTCTAGGTCAAGGGATTGCTGGTTTTATTACAGCACAAGGGAGAACAGGTGAAAATGATGCAAATGGTTTTGTTTTTAAGAATTGTAATGTGTATGGAGATGGAACAACATACTTGGGAAGACCATGGAGAGCTTATGCTAGAGTTCTATTCTACAATACCAATATGTCCGACATTGTAGTACCTACTGGTTGGGCGCCATGGTATTTCGCCGATCACGAGAACTACATACAATTTGCAGAGTATGGAAATATTGGAGCTGGTTCTAAAACAAACAAACGAGTGAAATGGTTGAAGAAGTTGGATTGGACAACCGTTAATATAATGGCGAGTGACAGTTTTGTTGATAATGAAGGATGGCTTAAGATAGCTTCAGAAATTTAG 945 0.3905 MDVSLPYKKIGYSTKKITVDPKGHHGCFSTIQSAIDSIPSNNRYWTSINIKEGIYREKLKIPYDKPYIIIQGAGMSKTIVEWNDHATTLQSPTFFTMADNIVVRFISFRNSYNNPRNSNPWAPAVAAMVSGDKTYFYNVGFFGFQDTLWDDQGRHYYKNCLIQGAVDFIFGAGQSIYEECSISVIASALGQGIAGFITAQGRTGENDANGFVFKNCNVYGDGTTYLGRPWRAYARVLFYNTNMSDIVVPTGWAPWYFADHENYIQFAEYGNIGAGSKTNKRVKWLKKLDWTTVNIMASDSFVDNEGWLKIASEI* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1040 314 ProSitePatterns Pectinesterase signature 2. 162 171 IPR033131 -
Mtr1g1040 314 Gene3D - 11 313 IPR012334 -
Mtr1g1040 314 Pfam Pectinesterase 24 286 IPR000070 GO:0030599|GO:0042545
Mtr1g1040 314 SUPERFAMILY Pectin lyase-like 13 310 IPR011050 -
Mtr1g1040 314 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 309 - -
Mtr1g1040 314 PANTHER PECTINESTERASE 10-RELATED 13 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1040 Mtr-Chr1 11837789 11840406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1040 15 261 Carbohydrate Esterase AT2G19150 47.984 1.65e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1040 - - aprc:113870328 425.631