LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g1038	ATGAGTTTTGGAGTTTCCTATGTTCTTCACCTTGTTTTACTGTTTTTTATGATGTTTATTGCTGCATGGTCTCAAGATGACGTTGTTATGCAAAAGCTGAAAAGTTCTATAACATCATCAAGCAATGATCTTGATTGGTCAGACAAAGATTGTTGCAAATGGAAGGGAGTTTCATGCAGCGGAACGACGGTCACTGAAATTAATTTAGGACAACTCAATATTCAAGGTTCTTTACCAAAAGAATTAATGCAACTCACTGCTTTAACTCGTTTCGATTGCAGTGAAAATGAGTTTTCTGGAGGTTTTCCATACATGCCAAATTCACTTCAGAACTTGTATATCAGAAACAACAGTTTCACTTCCATGCCTAGTGATTTCTTCACCAACATGAGTAATTTGATAGAGGTGGTAATTGATTCTAACCCTTTTTCTCAGTGGCAAATTCCTTCTAGTCTTAAGAATTGTTTAGCCCTTAAGCTTTTTTCTGCTAATAGTGCTGGTTTAGTTGGTGTAATCCCTGAATTCTTTGGAAATGACACTTTTCCAAGTTTGACAGATTTGAAGGTGTCTTTTAATTCTCTTGGAGGTAATTTGCCTAATAGTTTATCTGGTAGTTCTATAGAGAACCTTTGGGTGAATAATCAAAATGGTAATAAACTCAATGGTACACTTTCTGTTTTGCAAAATATGACGTCGTTGAAAGTAATTTGGGTTCAAAGTAATGCTTTTACTGGTCCAATACCAGATTTTTCAAATCATGATCAATTGTCTGAAGTTAGTTTCAGAGATAATCAGTTAACCGGTGTTGTTCCGCAGTCTTTAATTTCGCTTCAAAGTTTGAAAGCTGTGGCTTTGACGAACAATCGTCTTCAAGGGTCACCTCCTAAGTTTAAAGATGATGTTAAGGTTGATAATGATATGGATAAAGGGATTAATAGCTTTTGTACTAAGGTTGTTGGTCAACCATGTAGTCCACTTGTTAATGCTTTGCTTTCTGTTGTTGAACCTTTTGGTTATCCTCTTAAACTTGCTCAAAGTTGGCAAGGTAATGACCCTTGTCAAGGTGGTTGGTTAGGGATTGTTTGTTCTAGTGGGAACATTTCAGTTATCGCCTTCGAGAAAATGGGTTTTTCCGGTAGTATATCATCTAGTTTTGCAAGTCTTAGTTCTGTGACGAAGTTGCTTCTTGATAACAATCATCTCACCGGCACTATACCTAAGGAGCTTGCTAGTATGCCGGCTTTGAAAGAGCTAGATGTTTCGAATAATGCATTGTATGGTCAGATACCATCGTTTCGCGGAGATGTGGTTGTTAAAACCGGTGGAAATCCTGATATTGGAAAGGACAAACCTCCTGGCTCGCCCGGCTCTAGTTCTGGAGGTGAATATAAGAAGAAAATTAGTGTTGGAGCAATTGTTGGGATTGTGATGGGGATTGTTTGTTTACTTGGTGTAGTAGGGGTTTTGGTATTTGTTATGCGCGGTAGAAGACATAATAAGTGTGCTGGTAAAGTTCAAACTCCAAATGCAATAGTGGTACATCCTCGTCATTCAGGTGATGGAAATGGCGTGAAAATAAGTGTTGCAGCAGCCGGAAGTTCCAGTGTCGGCGTTGCACGAGGAACTGGTGGATTTAGTCCATCGAGTAGTGTTCGAAATGTGGAAGCTGGTAATATGGTGATTTCAATTCAAGTTCTAAGAGAAGTTACAAACAATTTTAGTGAAAAAAACATATTGGGGAAAGGTGGTTTCGCTACTGTATACAAAGGAGAATTGGACGATGGAACAAAGATTGCAGTGAAAAGGATGAAATCTGAAATGGTTGGTGACGAAGGGTTAAATGAGATCAAGTCTGAAATCGCGGTTCTCACTAGGGTTCGACACAGGCATTTGGTTGCACTCCATGGCTATTGCTTGGACGACAACGAGAAACTTCTTGTCTTTGAATACATGCCTCAGGGAACTCTTAGTCAACATATCTTTGACTGGAAAGACGATGGGTCGAAACCGCTCGGATGGAAATGTAGGCTTTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTCTGGCTCAGCAAATTTTCATCCACAGGGATCTGAAGCCATCAAATATCTTGCTTGGAGATGATATGCGCGCTAAAGTAGCCGACTTTGGATTAGTTCGGCTTGCTCCAGAAGGACAAACTTCATTTGCGACTAGACTTGCAGGAACTTTTGGTTATTTGGCACCAGAGTATGCAGTCACCGGTCGAGTCACCACAAAGGTAGACGTATACAGCTATGGCGTGATTCTTATGGAGATGATAACCGGAAGAAAAGTAATTGAGAACAGCCAATCGGACGAGAACATACACCTCGTTACATGGTTCCGAAGGATGCTACTAAACAAAGACTCATTCGAAAAGGTCATTGATCCAGCAATGGACATAGACGAGGAAGGCCTGGAGAGTTTCAGGACTATGGCAGGATTGGCAAGCCAATGTTGTGCAAGGGAGCCTCATCAGCGTCCTGACATGGGACATGTAGTGAATGTGCTAGCACCTCTTGTCGAGATTTGGAAGCCGGCTGAACCTGAAGCTGATGACATGTATGGGATTGACTTGGATATAAGTTTTCCTCAAGGACTTAGTAAGTGGCCGAATCTTGAAGGAACGAGCAACACACTTGATGTTTCGAAATCTTCTTCGATGGCTGCTGGTTGTGAGTATACACAGTCAAGTATCCCTCCTCGGTCTCCTGGATTTGCCAATTCTTTTACATCTGCTGATGCGCGATGA	2787	0.409	MSFGVSYVLHLVLLFFMMFIAAWSQDDVVMQKLKSSITSSSNDLDWSDKDCCKWKGVSCSGTTVTEINLGQLNIQGSLPKELMQLTALTRFDCSENEFSGGFPYMPNSLQNLYIRNNSFTSMPSDFFTNMSNLIEVVIDSNPFSQWQIPSSLKNCLALKLFSANSAGLVGVIPEFFGNDTFPSLTDLKVSFNSLGGNLPNSLSGSSIENLWVNNQNGNKLNGTLSVLQNMTSLKVIWVQSNAFTGPIPDFSNHDQLSEVSFRDNQLTGVVPQSLISLQSLKAVALTNNRLQGSPPKFKDDVKVDNDMDKGINSFCTKVVGQPCSPLVNALLSVVEPFGYPLKLAQSWQGNDPCQGGWLGIVCSSGNISVIAFEKMGFSGSISSSFASLSSVTKLLLDNNHLTGTIPKELASMPALKELDVSNNALYGQIPSFRGDVVVKTGGNPDIGKDKPPGSPGSSSGGEYKKKISVGAIVGIVMGIVCLLGVVGVLVFVMRGRRHNKCAGKVQTPNAIVVHPRHSGDGNGVKISVAAAGSSSVGVARGTGGFSPSSSVRNVEAGNMVISIQVLREVTNNFSEKNILGKGGFATVYKGELDDGTKIAVKRMKSEMVGDEGLNEIKSEIAVLTRVRHRHLVALHGYCLDDNEKLLVFEYMPQGTLSQHIFDWKDDGSKPLGWKCRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGQTSFATRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRKVIENSQSDENIHLVTWFRRMLLNKDSFEKVIDPAMDIDEEGLESFRTMAGLASQCCAREPHQRPDMGHVVNVLAPLVEIWKPAEPEADDMYGIDLDISFPQGLSKWPNLEGTSNTLDVSKSSSMAAGCEYTQSSIPPRSPGFANSFTSADAR*	929

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g1038	928	Gene3D	Phosphorylase Kinase; domain 1	543	650	-	-
	Mtr1g1038	928	Gene3D	Ribonuclease Inhibitor	24	321	IPR032675	-
	Mtr1g1038	928	MobiDBLite	consensus disorder prediction	440	461	-	-
	Mtr1g1038	928	SUPERFAMILY	L domain-like	44	432	-	-
	Mtr1g1038	928	PANTHER	OSJNBA0070M12.3 PROTEIN	1	928	-	-
	Mtr1g1038	928	ProSitePatterns	Protein kinases ATP-binding region signature.	579	601	IPR017441	GO:0005524
	Mtr1g1038	928	CDD	STKc_IRAK	579	852	-	-
	Mtr1g1038	928	Gene3D	Transferase(Phosphotransferase) domain 1	651	865	-	-
	Mtr1g1038	928	Pfam	Leucine rich repeat N-terminal domain	328	363	IPR013210	-
	Mtr1g1038	928	Pfam	Leucine rich repeat N-terminal domain	29	60	IPR013210	-
	Mtr1g1038	928	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	698	710	IPR008271	GO:0004672\|GO:0006468
	Mtr1g1038	928	Gene3D	Ribonuclease Inhibitor	326	450	IPR032675	-
	Mtr1g1038	928	MobiDBLite	consensus disorder prediction	903	928	-	-
	Mtr1g1038	928	SUPERFAMILY	Protein kinase-like (PK-like)	561	866	IPR011009	-
	Mtr1g1038	928	Pfam	Protein kinase domain	574	847	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr1g1038	928	PANTHER	TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED	1	928	-	-
	Mtr1g1038	928	SMART	serkin_6	573	853	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr1g1038	928	ProSiteProfiles	Protein kinase domain profile.	573	853	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g1038	Mtr-Chr1	11824612	11827920	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g1038	67	855	Receptor kinase-like Gene Family	AT5G07280	30.955	2.06e-77	273

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Mtr1g1038		Pkinase	4.2e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g1038	-		K00924	gmx:100776064	1163.67