LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g1037	ATGGGTTTTGGAGTTTCCATCAATCTTCACCTTGTTTTGCTCTTTTCCATGATCTTTGTTTCTGCATGGTCACAAGATGATGCTGCAATGCAAAAGCTGAAAACTTCAATCAAATCATCAAGCAGTAATCTTGATTGGTCAAACTCAGATTATTGCAAATGGGAGAAAGTTACCTGTAATGGAAATCGTGTCACTGCAATTCAAATTGCAGATACAAACATTCAAGGTTCTTTACCAAAAGAATTGATGCAACTCACTGAGTTAACTCGGTTTGAATGCAATGGAAACAGTTTATCTGGTGATTTTCCTTACATGCCAATTTCACTTCAGCATTTGTCTATTGGTAACAACAATTTCGCTTCGATGCCGAGTGATTTCTTCGCCAACATGAGTAATTTGATTGATGTGAGTATTGGTTATAACCCTTTTCCTCAATGGCAAATTCCTTCTAGTCTTAAGAATTGTTTGGCCCTTCAGACATTTTCTGCTATAAATGCTAGTTTTGTTGGTATAATCCCTGAATTCTTTGGAAAAGAAACTTTTCCAGCTTTAACTGATTTGTCTCTGTCTTTCAATTCTCTTGAAGGGAATTTGCCTAATAGTTTATCTGGTAGTTCTATATTGAATCTTTGGGTAAATGGTCAAAAGAGTAATAATAAACTCAATGGCACACTTTCTGTTTTGCAAAATATGACATCGTTGAAACAAATTTGGGTTCATGGTAATTCGTTTACTGGTCCAATACCTGATTTATCGAATCATGATCAATTGTTTGATGTTAGTTTGAGAGATAATCAGTTAACCGGTGTTGTTCCACCGTCTTTAACTTCGCTTCAAAGTTTAACAGTTGTTAATTTGACAAACAATTATCTTCAAGGGTCAGTTCCGAAGTTTCAAAATAGTGTTCGTGTTGATAATGATATTGATAGAGGGATTAATAGCTTTTGTACTAAGGTTGTTGGTCAACCATGTAGTCCGGTTGTTAATGCGTTGCTTTCGGTTGTTGAACCTTTTGGTTATCCTCTTGAACTTGCTAAAAGCTGGAAAGGTAATGACCCTTGTGGTGGTGATAGTTGGAAAGGGATTATTTGTTCTGCTGGTAATGTTTCAGTTATCAACTTTCAAAACATGGGTTTTTCTGGCAGTATATCTCCTAGTTTTGCTAGTCTTAGTTCTGTGACAAGGTTACTTCTTAGTAATAATCATCTCACCGGCACTATACCTAAGGAGCTTGCTAGTATGCCGGCTTTGAAAGAGATAGATGTTTCGAGTAATGCGTTGTATGGTCAGATACCATTGTTTCGCGGAGATGTTGTTGTTAAAACCAGTGGAAATCCTGATATTGGAAAAGATAAACCTCATGACTCGCCCAACAGCCCTGGCTCTACTTCTGGAGGTAAAGATAAGAAGAAAGTTAGTGTTGGAGTCATTGTGGGGATTGTGATGGGAATTGTTGGCTTTATAATTGCTGTAGGGGTTTTCGTATTTATTATGTATTGTAGAAGACATAATAAGCGTGATGGCAAAATTCAAACTCCGAATGCGATAGTGATACATCCTCATCATTCTGGAGAAGGAAATGGTGTGAAAATAAGTGTTGCAGCAGCTGAAAGTTCTGGTGCCGGTGTTACAGGAGGAACTGGTGGATTTAGTCCATCAAGGAGTGTTAAAAATGTGGAAGCTGGTAGTATGGTGATTTCAATTCAAGTGTTGAGAGAAGTTACAGACAATTTTAGTGAAAAGAACATATTGGGAAAAGGCGGTTTTGCCACTGTATACAAAGGAGAGTTGGACGATGGAACAAAGATTGCAGTTAAAAGGATGAAATCTGAAATGGTTGGTGACCAAGGGCTGAATGAGATCAAGTCCGAAATCGCGGTTCTCACTAAGGTTCGACACAGGCATTTGGTTGCACTCCTTGGCTATTGCTTGGACGAAAATGAGAAACTTCTTGTCTTCGAATACATGCCTCAGGGAACTCTTAGTCAACATCTCTTTGATTGGAAAGACGACGGGTTGAAACCGCTTGGATGGAAGAGAAGGCTTTCCATTGCCTTAGATGTTGCTAGAGGTGTTGAATATCTTCATGGTCTGGCTCAGCAAATTTTCATCCACAGGGATCTGAAACCATCGAATATCTTGCTTGGAGATGATATGCGTGCTAAAGTAGCCGACTTTGGATTAGTTCGACTTGCTCCAGAAGGACAAGCTTCATTCCAGACTAAACTTGCAGGAACCTTTGGATATATGGCACCAGAGTATGCAGTCACTGGCCGAGTCACCACAAAGGTAGACGTATACAGCTATGGTGTGATTCTTATGGAGATGATAACCGGAAAGAAGGCAATTGATAATAGCCGACAAGATGAGAATATCCACCTTGTTACATGGTTCCGCAGGATGCTACTGAACAAAGACTCATTTGAAAAGGTCATTGATCCAGCAATGGACATCGACGAGGAAGGCTTGGAGAGTTTCAGGACTATTGCAGGATTGGCTAGCCACTGTTGTGCAAGGGAGCCTAATCAGCGTCCTGACATGGGACACGTAGTGAATGTGCTAGCACCCCTTGTCGAGATTTGGAAGCCGGCTGAACCTGATGTTGATGATATATATGGGATTGACTTGGATATGAGTTTGCCTCAAGCACTGATTAAGTGGCAGAATCATGAAGGAATGAGCAACACACTTGATGTTTCGTATACTTCGTCAATGGCTGCTAGTTGTGAGAATACACAGTCAAGTATACCACCTAGGTCTCCTGGATTTGCAGATTCCTTTACATCTAATGATGCAAGATAA	2802	0.3986	MGFGVSINLHLVLLFSMIFVSAWSQDDAAMQKLKTSIKSSSSNLDWSNSDYCKWEKVTCNGNRVTAIQIADTNIQGSLPKELMQLTELTRFECNGNSLSGDFPYMPISLQHLSIGNNNFASMPSDFFANMSNLIDVSIGYNPFPQWQIPSSLKNCLALQTFSAINASFVGIIPEFFGKETFPALTDLSLSFNSLEGNLPNSLSGSSILNLWVNGQKSNNKLNGTLSVLQNMTSLKQIWVHGNSFTGPIPDLSNHDQLFDVSLRDNQLTGVVPPSLTSLQSLTVVNLTNNYLQGSVPKFQNSVRVDNDIDRGINSFCTKVVGQPCSPVVNALLSVVEPFGYPLELAKSWKGNDPCGGDSWKGIICSAGNVSVINFQNMGFSGSISPSFASLSSVTRLLLSNNHLTGTIPKELASMPALKEIDVSSNALYGQIPLFRGDVVVKTSGNPDIGKDKPHDSPNSPGSTSGGKDKKKVSVGVIVGIVMGIVGFIIAVGVFVFIMYCRRHNKRDGKIQTPNAIVIHPHHSGEGNGVKISVAAAESSGAGVTGGTGGFSPSRSVKNVEAGSMVISIQVLREVTDNFSEKNILGKGGFATVYKGELDDGTKIAVKRMKSEMVGDQGLNEIKSEIAVLTKVRHRHLVALLGYCLDENEKLLVFEYMPQGTLSQHLFDWKDDGLKPLGWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGQASFQTKLAGTFGYMAPEYAVTGRVTTKVDVYSYGVILMEMITGKKAIDNSRQDENIHLVTWFRRMLLNKDSFEKVIDPAMDIDEEGLESFRTIAGLASHCCAREPNQRPDMGHVVNVLAPLVEIWKPAEPDVDDIYGIDLDMSLPQALIKWQNHEGMSNTLDVSYTSSMAASCENTQSSIPPRSPGFADSFTSNDAR*	934

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g1037	933	SMART	serkin_6	578	858	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr1g1037	933	MobiDBLite	consensus disorder prediction	444	469	-	-
	Mtr1g1037	933	CDD	STKc_IRAK	584	857	-	-
	Mtr1g1037	933	Gene3D	Ribonuclease Inhibitor	327	452	IPR032675	-
	Mtr1g1037	933	PANTHER	TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED	1	933	-	-
	Mtr1g1037	933	ProSitePatterns	Protein kinases ATP-binding region signature.	584	606	IPR017441	GO:0005524
	Mtr1g1037	933	MobiDBLite	consensus disorder prediction	910	933	-	-
	Mtr1g1037	933	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	703	715	IPR008271	GO:0004672\|GO:0006468
	Mtr1g1037	933	Gene3D	Phosphorylase Kinase; domain 1	550	655	-	-
	Mtr1g1037	933	Pfam	Protein kinase domain	579	852	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr1g1037	933	Gene3D	Ribonuclease Inhibitor	23	322	IPR032675	-
	Mtr1g1037	933	Pfam	Leucine rich repeat N-terminal domain	25	60	IPR013210	-
	Mtr1g1037	933	Pfam	Leucine rich repeat N-terminal domain	329	365	IPR013210	-
	Mtr1g1037	933	PANTHER	OSJNBA0070M12.3 PROTEIN	1	933	-	-
	Mtr1g1037	933	Gene3D	Transferase(Phosphotransferase) domain 1	656	866	-	-
	Mtr1g1037	933	SUPERFAMILY	Protein kinase-like (PK-like)	559	864	IPR011009	-
	Mtr1g1037	933	SUPERFAMILY	L domain-like	42	434	-	-
	Mtr1g1037	933	ProSiteProfiles	Protein kinase domain profile.	578	858	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g1037	Mtr-Chr1	11810963	11815374	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g1037	64	860	Receptor kinase-like Gene Family	AT5G07280	31.273	1.20e-85	297

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Mtr1g1037		Pkinase	5.7e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g1037	-		K00924	gmx:100776064	1232.62