Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1034 ATGGAACCATTTCTTATCGAGGTCCCTATTGGAAAAGATGTTATGGAGACTCTCATCAACTTAGCTCGTAGTCAACAAGCTGGAATAACCGTGTTGAGTGGTTTTGGTCTTGTTTCTGATGTTACACTTCTTGAATCGATGCCTTGCACCCCTGCTTTCCGCGTCGAAGGATTGTTCCATATGACATCCCTCTCCGGAACTTACATCAATGCTGACGGCGTTCATGTTCCTCCTCGGTTCATGAGAACCAACCCAACATATTCCTCTTTCTCCATTATCTTCTCCGGCACTCATGGACAACTGTATGGTGGAATTGTTGGAGGAAGTATTAAGGCTGCTGGTGTTGTTTCGATTACGGCCAGTCTTTTCAAGAAGCCGTCATTTCATAGGATGGGTGTCGTCAATGGAAGTGTTCGTGAAATAACGGAGGACGATCCAATATATGATAAGGGTTTTATCATGAACTTTGATCAGGGATCTTATGAACGCATCACTCGTACTAGCTAG 507 0.4418 MEPFLIEVPIGKDVMETLINLARSQQAGITVLSGFGLVSDVTLLESMPCTPAFRVEGLFHMTSLSGTYINADGVHVPPRFMRTNPTYSSFSIIFSGTHGQLYGGIVGGSIKAAGVVSITASLFKKPSFHRMGVVNGSVREITEDDPIYDKGFIMNFDQGSYERITRTS* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1034 168 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 134 IPR014476 GO:0003680
Mtr1g1034 168 CDD DUF296 3 115 IPR005175 -
Mtr1g1034 168 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 131 - -
Mtr1g1034 168 Pfam Plants and Prokaryotes Conserved (PCC) domain 3 124 IPR005175 -
Mtr1g1034 168 ProSiteProfiles PPC domain profile profile. 1 144 IPR005175 -
Mtr1g1034 168 Gene3D - 3 142 - -
Mtr1g1034 168 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1034 Mtr-Chr1 11759717 11760223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1034 1 131 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.338 1.50e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1034 - - mtr:MTR_1g032910 336.65