Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1024 ATGCGCGTGCTTGCCTTTCTTCCCTTCCCACTCAAAATAAACAACAACACTTCAATTGTGAACCACTTTACCGGAATGCAACACATGATCAATCAATGGAAACCACCGCCGCCGCCGCTAAACACCTCCAAAACTCCATCCCTTACGGCGGAAGATTCACCTCCTCTGCCCATCACCAATCGTAGAGAGAGGAGTGAGATGGTGGAAGTTGGAGATCCGACTGTTGTTGCTAGAAAAGTTCAGAAGGCTGACCGTGAGAAAATCAGGAGAGATCGCTTGAATGATCATTTTCATCAATTGGGTACCGTCATAGATCCTGATAGACCACGGAATGACAAGGCAACCATCATCACTGAGACAATCCAAGTGCTAAAGGACATAACATCTGAAGTTGATAGACTGAAAACAGAGCACAAATCCCTTTCTGAAGAGTCACGTGAACTAATACAAGAAAAGACTGAACTCCGAGAAGAGAAAGCGTCTTTAAAATCCGATATAGAAAATCTTAATTCCCAGTATCAGCAGAGAGTAGGAGTCATGCCGCCATGGACTGCAATTGACCATTCTGTTGTCATGAGTAGCCCTTATACGTACCCCGTTCCTATGCCAATGCCAATCCCTGCTGGTCCAGTTTCCATTCACCCACCACCTATGCAACCTTTTCCTTACTTTGGAAACCAAAATCCTGGTCATATTCCAAGTCTATCCTCAATGTATATTCCATTCTCGGCTCCAGCTATCCCTCCAATGGAGATGGCATCAGCTCAATATCCTTCTACATCCCACGTGTTTAGTCGAAAAGAGTCTCGAAGCAAGTCACTGGGTCACAGAAGAAGACCTAGTGTTGCAGAAAGATGTAGTGTATCTCCAGATGTGGCAACAGAGCTTGAGCTTAAGATGCCTGGATCATCAACACAACAGGATTGCACATCTAGAGGAAAAAAGGAAAAGCATTCGGTGATGAGTGATAGAATCATCGTAGATGAGAGTGCTTCGAGCCGGTATTCTGCATCTCAGGGACTTCAAGATAGCTCCAACAGCGTCAGCAACACTCCAAAGGCCGGTTAA 1068 0.4532 MRVLAFLPFPLKINNNTSIVNHFTGMQHMINQWKPPPPPLNTSKTPSLTAEDSPPLPITNRRERSEMVEVGDPTVVARKVQKADREKIRRDRLNDHFHQLGTVIDPDRPRNDKATIITETIQVLKDITSEVDRLKTEHKSLSEESRELIQEKTELREEKASLKSDIENLNSQYQQRVGVMPPWTAIDHSVVMSSPYTYPVPMPMPIPAGPVSIHPPPMQPFPYFGNQNPGHIPSLSSMYIPFSAPAIPPMEMASAQYPSTSHVFSRKESRSKSLGHRRRPSVAERCSVSPDVATELELKMPGSSTQQDCTSRGKKEKHSVMSDRIIVDESASSRYSASQGLQDSSNSVSNTPKAG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1024 355 MobiDBLite consensus disorder prediction 310 324 - -
Mtr1g1024 355 MobiDBLite consensus disorder prediction 329 355 - -
Mtr1g1024 355 PANTHER TRANSCRIPTION FACTOR BHLH121 53 354 IPR044579 GO:0003700|GO:0055072
Mtr1g1024 355 Gene3D - 76 152 IPR036638 GO:0046983
Mtr1g1024 355 Coils Coil 124 172 - -
Mtr1g1024 355 PANTHER TRANSCRIPTION FACTOR BHLH11 53 354 - -
Mtr1g1024 355 MobiDBLite consensus disorder prediction 258 355 - -
Mtr1g1024 355 Pfam Helix-loop-helix DNA-binding domain 78 126 IPR011598 GO:0046983
Mtr1g1024 355 MobiDBLite consensus disorder prediction 32 64 - -
Mtr1g1024 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 146 IPR036638 GO:0046983
Mtr1g1024 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 127 IPR011598 GO:0046983
Mtr1g1024 355 SMART finulus 83 133 IPR011598 GO:0046983
Mtr1g1024 355 CDD bHLH_AtILR3_like 82 156 - -
Mtr1g1024 355 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1024 Mtr-Chr1 11615134 11617786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1024 75 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 51.639 1.67e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g1024 HLH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1024 - - cam:101509613 386.726