Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1012 ATGGCAGACCGAGGAGCTACCGGAGACAGAGCCGGATTCGGAAGAGGTTTCGGAGATCGTGGTAGAGGTGGCAGAGGCGGAGATCGTGGCCGTGGAGGTCGCCGCAGAGGCGCCGGCCGTCGTGAAGAGGAAGAAAAATGGGTTCCAGTGACAAAACTCGGCCGTCTCGTGAAAGAAGGCAAAATCCGCAGCTTAGAACAAATCTACCTCCACTCTCTCCCCATCAAAGAACACCAAATCATCGACACCTTAGTCGGTCCCACTCTGAAAGACGAGGTGATGAAAATAATGCCGGTTCAGAAACAAACCCGAGCCGGTCAACGAACCCGGTTCAAAGCTTTTGTAGTTGTGGGTGACAACAATGGTCATGTTGGGTTAGGTGTGAAGTGCAGTAAGGAAGTTGCTACTGCGATTCGCGGTGCCATTATTCTTGCGAAATTGAGTGTGATTCCTGTGAGGAGAGGTTACTGGGGGAATAAGATTGGGAAGCCACATACTGTGCCGTGTAAGGTTACTGGAAAGTGTGGTTCTGTTACTGTGAGGATGGTTCCTGCTCCTCGTGGTTCTGGTATTGTTGCTGCTAGGGTTCCTAAGAAGGTTTTGCAGTTTGCTGGGATTGATGATGTTTTTACTTCTTCAAGGGGATCCACCAAAACCCTTGGCAATTTCGTTAAGGCTACATTTGACTGTCTGATGAAGACCTATGGTTTCTTGACACCTGAATTCTGGAAGGAGACTCGCTTCAGCAAATCTCCATTCCAAGAGTACACCGATATGTTGGCAAAGCCCACAACAAAGGCCTTGATCTTGGAGGAGGAAAGGGTGGAAGCTTAA 834 0.494 MADRGATGDRAGFGRGFGDRGRGGRGGDRGRGGRRRGAGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDMLAKPTTKALILEEERVEA* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1012 277 MobiDBLite consensus disorder prediction 21 45 - -
Mtr1g1012 277 TIGRFAM uS5_euk_arch: ribosomal protein uS5 42 249 IPR005711 GO:0003735|GO:0006412|GO:0015935
Mtr1g1012 277 Gene3D - 46 151 - -
Mtr1g1012 277 Pfam Ribosomal protein S5, C-terminal domain 173 245 IPR005324 GO:0003735|GO:0005840|GO:0006412
Mtr1g1012 277 Gene3D - 152 245 IPR014721 -
Mtr1g1012 277 SUPERFAMILY Ribosomal protein S5 domain 2-like 165 245 IPR020568 -
Mtr1g1012 277 Pfam Ribosomal protein S5, N-terminal domain 89 153 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr1g1012 277 SUPERFAMILY dsRNA-binding domain-like 85 154 - -
Mtr1g1012 277 MobiDBLite consensus disorder prediction 1 45 - -
Mtr1g1012 277 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 275 - -
Mtr1g1012 277 ProSiteProfiles S5 double stranded RNA-binding domain profile. 89 152 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr1g1012 277 ProSitePatterns Ribosomal protein S5 signature. 106 138 IPR018192 -
Mtr1g1012 277 PANTHER RIBOSOMAL S SUBUNIT 1 275 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1012 Mtr-Chr1 11531212 11533037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1012 43 263 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 92.308 6.23e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1012 K02981 - gmx:100797105 474.552