Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1000 ATGGGCAGCGTTAATTCTCCCATTTCTGTTGATTCTTCTAGTGTTACTTCTTCCAATCCTGGCACTCAGAAGGTTCTTTGGATAGTTTGGTCAAATATGACATCTTCAGATGTTGATTGGAAACCAAAGATTGGAATGGGATTTGATTCTATGGAAGAGGCTAATAAGTTTTGGCTTGCTTATAGTTTCCGTGTGGGCTTCGGAGTTAGAGTACGTTTCGCAAACAAAAAAGAAGATGGTAGCGTATCGTCATGTCGATTGGTTTGTTGTAAGGAAGGGCTAAAAAGGAAGGAGAAAAGATACGCATATGAAGGAAAATATACGAGAGCCGATGTTAGAACAAATTGCCCTGTAAGAATTACACTTTCTCGTAAGAATGGAAAGTTGGTCATCAATGACTTTGAAGAAGAACATAACCATGATCTACAAAATTCTGAGACAAAACACATGCTTCGGTCACATAGAAAGATAACTGAGGTGCAAGCATATGAGATTGATTTGGCTAATGACTCTGGATTAAGGCAGAAGTCAACATTTCAACTTTTGAGCACACAAGCAGGGCACAGAGCTAATGTTGGATTTACAGAGGTGGATGTAAGAAACTACATCACTGCAAGAAGAAAAAGAAGTATGGCATATGGTGAGATTGGATGTCTTTCAAAATATTTTCAACGACAATTGTTGGAGAATCCATCCTTCTTTCATGCATATCAGATGGATGTAGAAGAACATATTACAAATGTGTTTTGGTGTGATGCACAGATGATTTTGGATTACGGAGGTTCAGTCATATTTGGGGCGGCACTAATGTATGATGAGACAAGTGAGTCATTTAGATGGTTGTTTGATACATTCTTACAGGCACACAACAACAAAAAACCAAAGACGATCTTCACTGACCAAGATCAAGCAATGGTAAGGGCAGTTGCAGATGTGATGCCCGAGACTCATCATGGTTTATGCACATGGCATTTGTTACAAAATGGAGTTAAACATCTTGGGAACATGATGAAGGGAGGATCTTCTTTGCTTAGTGATATCAAAAAATGCATGTATGATATTGACATTGAAGCAAATTTTGAGAAACTTTGGTTTGACATGATCCACAAATTTAATATTCATGACAAATCTTGGATCATTTCAACTTATGAGCTTAAAAAAAAATGGGCTTCATGTTATATGAAGGGAGTGTTAACACTTGGTATGCGAAGTACACAAGTTAGTGAAAGTTTGAATGCTCACTTCAAGTCTTGTATGAAACCGAATGTGAATATCCTAGAATTCTTCAACCATTTTGAAATAGTTGTTGAGGAGAAGAGAGCAAAAGAATTGAGTTGTGTGTATGAATCCTCCCATAAGCTTGCAAGGTTAGCATATGAAACTGCACCAATACTAATTCAAATGGGAAAAAACATACACACACACACTGTATTTGAATTGTTTCAAGATGAGTTTAAGTTATTCTTAACTTTATCTGTACCAATTAGACATGAATCTGACTCTCTTTGTGAATATGTCATCACAAAGGCAAAACATGAAGGATCTTGGAGAGTTTCATTTAACCGTGTTTCAAATTCCATCACTTGTAGTTGTAGGAAATTTGATACTTTTGGCATACTTTGTTCACATGCTTTAAAAGTGTTTGAATTGAATGATGTTAAGGTAATTCCTGACAACTATATTTTAAAAAGGTGGACAAGAGAAGCCCGTTATGGCGTTGTGCAAGATTTTAGGGGAAAGGAGGTTGAAGGAGATCCTAACTTGTCTAGAAATCGAATGTTCAGACAAGTTGTCTCTAAGTTCATTAAAGCGGCAACTGAAGCATCACCCAAGGAAGAATGGCTCAAGTTTCTTGATAATGGTGTAGATGACATGTTCAAGAAAATAATTGAACTTCGGACACAAGCTATGGACAATAACGGTGATAATGGTGCTCGTCCAGAAGTTGTGAGTTTGGATTTTATGCAAGCAAAGGGGTTCAGGGTACGACCCGGTTCAAAGCGAATTAAGCGACACAAAAGTTGTCTGGAAAAACAGCATAGTCGCGCTACATCTAGGCGCGCTCCACCTAAAGAAAAAAGTTCACAGGTTGATGGAGTATCTTGTTCTGCGCCTACAACTTATGAGCCCCCACAAGCACATGAGTCTCAAGTCAATTACACAGCCATGCTAATGGTAATTTCAAAAACAAATTCATAA 2199 0.3774 MGSVNSPISVDSSSVTSSNPGTQKVLWIVWSNMTSSDVDWKPKIGMGFDSMEEANKFWLAYSFRVGFGVRVRFANKKEDGSVSSCRLVCCKEGLKRKEKRYAYEGKYTRADVRTNCPVRITLSRKNGKLVINDFEEEHNHDLQNSETKHMLRSHRKITEVQAYEIDLANDSGLRQKSTFQLLSTQAGHRANVGFTEVDVRNYITARRKRSMAYGEIGCLSKYFQRQLLENPSFFHAYQMDVEEHITNVFWCDAQMILDYGGSVIFGAALMYDETSESFRWLFDTFLQAHNNKKPKTIFTDQDQAMVRAVADVMPETHHGLCTWHLLQNGVKHLGNMMKGGSSLLSDIKKCMYDIDIEANFEKLWFDMIHKFNIHDKSWIISTYELKKKWASCYMKGVLTLGMRSTQVSESLNAHFKSCMKPNVNILEFFNHFEIVVEEKRAKELSCVYESSHKLARLAYETAPILIQMGKNIHTHTVFELFQDEFKLFLTLSVPIRHESDSLCEYVITKAKHEGSWRVSFNRVSNSITCSCRKFDTFGILCSHALKVFELNDVKVIPDNYILKRWTREARYGVVQDFRGKEVEGDPNLSRNRMFRQVVSKFIKAATEASPKEEWLKFLDNGVDDMFKKIIELRTQAMDNNGDNGARPEVVSLDFMQAKGFRVRPGSKRIKRHKSCLEKQHSRATSRRAPPKEKSSQVDGVSCSAPTTYEPPQAHESQVNYTAMLMVISKTNS* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1000 732 Pfam MULE transposase domain 258 328 IPR018289 -
Mtr1g1000 732 PANTHER OS03G0181600 PROTEIN 36 259 - -
Mtr1g1000 732 PANTHER OS03G0181600 PROTEIN 263 635 - -
Mtr1g1000 732 MobiDBLite consensus disorder prediction 1 20 - -
Mtr1g1000 732 MobiDBLite consensus disorder prediction 696 714 - -
Mtr1g1000 732 MobiDBLite consensus disorder prediction 663 677 - -
Mtr1g1000 732 ProSiteProfiles Zinc finger SWIM-type profile. 516 552 IPR007527 GO:0008270
Mtr1g1000 732 SMART 26again6 527 554 IPR006564 GO:0008270
Mtr1g1000 732 MobiDBLite consensus disorder prediction 663 714 - -
Mtr1g1000 732 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 263 635 IPR031052 GO:0006355
Mtr1g1000 732 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 259 IPR031052 GO:0006355
Mtr1g1000 732 MobiDBLite consensus disorder prediction 678 693 - -
Mtr1g1000 732 Pfam SWIM zinc finger 525 549 IPR007527 GO:0008270
Mtr1g1000 732 Pfam FAR1 DNA-binding domain 56 143 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1000 Mtr-Chr1 11436415 11440553 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g1000 FAR1 7.1e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1000 - - cam:101507984 928.702