Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0979 ATGAGCAAATCCAACAATTTCTTTCATAATCTCATAAAGCCCTTCAAATTTGGTTCTACCAGAGAGGGAAATAGTGAAGACGATATACAGAACATAGCTACACAAGAGCAAAGGACATTTTCATATGAAACATTGGTTGCTGCTACCAACAACTTTCATGTTCATAACAAACTTGGTCAGGGAGGCTTTGGACCTGTCTACAAGGGTAAATTGAATGATGGGAGAGAGATAGCGGTGAAGAAGTTATCACGTGGTTCAAATCAAGGGAAGACACAGTTTGTTGCGGAGGCAAAGCTGCTGACTCGTGTGCAGCACCGTAATGTGGTGAATTTGTATGGTTATTGTATCCATGGCAGAGAGAAGCTTCTTGTGTATGAGTATGTCCCTCTTGAGAGCCTTGACAAGTTCCTATTCAGATCAAACAAGAAACAAGAGCTAGATTGGAAACGTAGATTTGACATAATCAATGGAGTGGCAAGAGGCTTACTTTATCTTCATGAAGACTCTCATATTTGCATTATCCATCGTGACATAAAAGCAGCCAACATTTTACTTGATGAAAAATGGGTCCCTAAGATCGCTGACTTTGGCTTGGCTCGTCTCTTTCCAGAAGATGAAACTCATGTCAATACACGTGTGGCTGGAACACATGGATACATGGCTCCGGAGTACTTGATGCATGGACATCTATCTGTGAAGGCAGACGTGTATAGCTATGGAGTTTTGGTGTTGGAGTTGATCTCCGGTCATCGAAACTCCTCCTCGGATTCAGCCTTCAATGGAGACAATCTCCTTAATTGGGCATACAAACTATACAAGAAAGGGAAGTGGTTAGAAATGGTGGATCCCACAGTGGCATCTTCTGTGGCAACCACCGAGCAAGTGGAAGTGTGCATTCGAGTGAGTCTGCTGTGCACGCAAGGAGATCCACAACTTCGTCCAACGATGGGGCGTGTTGCGTTGATGTTATCAAAGAAGCCTCCAAGTCACATGGAAGAACCAACGAGACCAGGTATGCCCGGTTCCAGATACAGAAGAGCATTGCCTCGTAGTCATACACCTTTCACTACTGATGATGAGAATTCATCTGCTTCACACATTGATTCCAGCAATTGTGACACTATTACTACTGCTACTACTACCACCAATTCCACTTCTTCTGCAACAAGAACAGCCTCTGCTACTGCACAAGTAGACTCCCGAGGGAAACGTCCAATGTTTCCTTGA 1227 0.4385 MSKSNNFFHNLIKPFKFGSTREGNSEDDIQNIATQEQRTFSYETLVAATNNFHVHNKLGQGGFGPVYKGKLNDGREIAVKKLSRGSNQGKTQFVAEAKLLTRVQHRNVVNLYGYCIHGREKLLVYEYVPLESLDKFLFRSNKKQELDWKRRFDIINGVARGLLYLHEDSHICIIHRDIKAANILLDEKWVPKIADFGLARLFPEDETHVNTRVAGTHGYMAPEYLMHGHLSVKADVYSYGVLVLELISGHRNSSSDSAFNGDNLLNWAYKLYKKGKWLEMVDPTVASSVATTEQVEVCIRVSLLCTQGDPQLRPTMGRVALMLSKKPPSHMEEPTRPGMPGSRYRRALPRSHTPFTTDDENSSASHIDSSNCDTITTATTTTNSTSSATRTASATAQVDSRGKRPMFP* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0979 408 PANTHER RECEPTOR-LIKE KINASE 3 373 - -
Mtr1g0979 408 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 373 - -
Mtr1g0979 408 Pfam Protein tyrosine and serine/threonine kinase 53 319 IPR001245 GO:0004672|GO:0006468
Mtr1g0979 408 MobiDBLite consensus disorder prediction 326 408 - -
Mtr1g0979 408 ProSiteProfiles Protein kinase domain profile. 52 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0979 408 Gene3D Phosphorylase Kinase; domain 1 16 127 - -
Mtr1g0979 408 SUPERFAMILY Protein kinase-like (PK-like) 36 345 IPR011009 -
Mtr1g0979 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Mtr1g0979 408 MobiDBLite consensus disorder prediction 354 398 - -
Mtr1g0979 408 CDD STKc_IRAK 58 325 - -
Mtr1g0979 408 Gene3D Transferase(Phosphotransferase) domain 1 129 335 - -
Mtr1g0979 408 SMART serkin_6 52 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0979 Mtr-Chr1 11241729 11246943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0979 32 339 Receptor kinase-like Gene Family AT4G11530 51.757 6.42e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr1g0979 PK_Tyr_Ser-Thr 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0979 - - mtr:MTR_1g031780 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0979 1 11241729 11246943 Mtr1g0979 1 11241729 11246943 ECH