Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0978 ATGTTGACAGCATGCAGAATCCCCCCAATCCTAACACCCTCTTCTTCCTCCACTTCTCATTTCTCGCCCTCAATTACAACAACCAGAGTCACTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCCAAATCACACTCCAAACTTCCTCTCTTTGCCAGGTTCACTCGTAGTTGCAGCAGCAGCAGTAGCAATAACGGTCATTCTGATCATTCCACTGCTCCCGCCTCTCCCGAAATTGATGAAGTTGAAAGTGAATCATCTTCTGACTTTGGTGATAGCTATGTGGCCTTGTTTGTTCGTATGTTAGGCCTAGATCATGATCCTCTTGACAGAGAACAAGCTATAATTACTCTTTGGCAATATTCACTTGGTGGAAAGAAGTATATTGACAATATAATGCAATTTCCTGGTTGTATTAACCTTGTTGTCAACCTCCTTAGAGCAGAATCTAGTTCGGCTTGTGAGGCAGCTGCAGGCCTTCTGCAATCACTATCTTCAATTGACCAATATAGGAATTCTGTAGCAGATAGTGGAGCTATAGAAGAGATAAATAGATTGCTGACACAGTCTTCCTTGGCTTCTGAGGTAAAGGTGCAGAGTTTGAACATGCTGTGGAATTTATCCGTTGATGAGAAGCTCCGAGTTAAAATTGCAAAGAGCGATCTTCTTTTGTTAGCTATGAAGTACCTCGATGATGAGGATATGAAAGTGAAGGAAGCTGCAGGGGGTATTTTGGCAAATTTAGCATTGAGCCATGTTAACCATGACATGATGGTTGAAGCAGGTGTTATTCCAAAATTGGCGAAGTTCTTACCATATGAGTCCGAAGTATCTCGGGTCATTAGAAAGGAAGCAAGGAATGCATTGCTAGAACTTGTGAAGGACGATTATTACAGAATTCTTGTTATTGAGGAAGGTTTAGTTCCTGTGCCATTAATAGGTGCTGCAGCCTATAAGTCATACAACCCACGTTCATACGAGGCACCTGCATTTCCAGATGGCACAGAAATCGAAAGGACTTATGACAAACCTTCTAGATTTGGCGCAGCAGAATTACTTATTGGATTGAATGTTGATAATAATGCTAACGTAGATGAAGCAAAAGTCAATGCAATTATTGGACAGACACAACAACAATTCCTTGTTCGTGTTGGTGCTATTGAAATGGAAGAAACATCAACTCGTTCTGAATGTTCAGATGATCAGCCGCGTCTGACACTCTTACATTGGATCGACGGTGTTGCTCGTTTAGTGCTGATACTAGAACTAGAAGATAAGTCAGCAATAGTAAGAGCTGCAGAGTCAATTGCTAGTGCATGTATAAATGAACATATGCGTATTGCATTCAAGGAGGCTGGTGCAGTTAGGCATTTAGTACGGCTTTTGTCTTGGAATGATAATGCAGTCCAGCTGGCAGCGACGCAAGCTTTGGAAAAGCTGTCTGCTAGCAATGTTGTTTGCCGAGTAATTGAAACCGAAGGTGGTTTAGCTCCTTTAGTTAGTATTTTAAAATGCTCAGACGTAGCTGGAGCTATTGCGGAAAAGTCGTTGAACGTACTTGCTCAGATATTAGATCCCAATAAAGAGATGCAGTTAAAGTTTTATGATGGACCAGTTAATGGATCTAAGAAGGCATTTGATGGAGCCGATGATGGATCAAAGGAATTAAGTAGTACCGAGCAAGCCGTATCGAAAACAAACCCAAGGAGCGATATACTGAACTCAGTTTTCACTGCACGCCTTGTGGAGATTTTGAAGTCCTTTTTACCCAGTTTACAAGAAAAAGCCGCATCTGTTCTTGAGTTTGTGGCATTGATTGATCCAACACTGAGTCCGATTATTTCTGTTGATATTGAAATTGGTCTCAATTCTACTTTTCAGCAAAATCTCTTGAAAATTTCGGAGACAAAATTTGACGTGGAAGATCAGTTTTCAGCAGCATATGCTATTGAACTTGAAGAGGCCGGTCTTGCAATATCTGCAGCATCCCGGTTACTGACAAGACTACTTGACTCTAAGCAGTTTCGCGAAAAAATAAATGTCTCCCATTTCATTGACACGCTCCGCAAAATTCTCAAGACCCACATTCCCCTCCGCAGCAAGGATTGGGTAGCTGCTTGCCTAGTTAAACTAAGTTCTCTCTCTGGTTACGACACGAGTACTAATCCGATCAACGTAGATGTTACACTTTATGATACAATTCCGAGACTTGTAGAACAAATCAAAACTTCATTCTCTTTAGAAGCACGGGAAAAAGCTGTTGTAGAACTTAGTAGAATAGTATCTGAAGGGGTGGTAGATTCCACAGAACATATTATTTCAGAAGGGGCTGTGTATTCTTTGGTGAAGCTGATTGAAGAAGGTAACGAAAGAGGTATTGAAGCAAGCTTGAAAATACTGTACAATCTGAGTATGGACAGTGAGAATCATTCAGCCCTTCTAGCTGCTGGAGCAGTCCCAGCCTTAAGAAGAATTGTTCTGTCAGAAAAACCACAGTGGCAAAGGGCACTTCATTTGCTCAGGAGTTTGGAAACATGA 2535 0.4138 MLTACRIPPILTPSSSSTSHFSPSITTTRVTLSSSSSSSSSKSHSKLPLFARFTRSCSSSSSNNGHSDHSTAPASPEIDEVESESSSDFGDSYVALFVRMLGLDHDPLDREQAIITLWQYSLGGKKYIDNIMQFPGCINLVVNLLRAESSSACEAAAGLLQSLSSIDQYRNSVADSGAIEEINRLLTQSSLASEVKVQSLNMLWNLSVDEKLRVKIAKSDLLLLAMKYLDDEDMKVKEAAGGILANLALSHVNHDMMVEAGVIPKLAKFLPYESEVSRVIRKEARNALLELVKDDYYRILVIEEGLVPVPLIGAAAYKSYNPRSYEAPAFPDGTEIERTYDKPSRFGAAELLIGLNVDNNANVDEAKVNAIIGQTQQQFLVRVGAIEMEETSTRSECSDDQPRLTLLHWIDGVARLVLILELEDKSAIVRAAESIASACINEHMRIAFKEAGAVRHLVRLLSWNDNAVQLAATQALEKLSASNVVCRVIETEGGLAPLVSILKCSDVAGAIAEKSLNVLAQILDPNKEMQLKFYDGPVNGSKKAFDGADDGSKELSSTEQAVSKTNPRSDILNSVFTARLVEILKSFLPSLQEKAASVLEFVALIDPTLSPIISVDIEIGLNSTFQQNLLKISETKFDVEDQFSAAYAIELEEAGLAISAASRLLTRLLDSKQFREKINVSHFIDTLRKILKTHIPLRSKDWVAACLVKLSSLSGYDTSTNPINVDVTLYDTIPRLVEQIKTSFSLEAREKAVVELSRIVSEGVVDSTEHIISEGAVYSLVKLIEEGNERGIEASLKILYNLSMDSENHSALLAAGAVPALRRIVLSEKPQWQRALHLLRSLET* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0978 844 Pfam Armadillo-like 98 267 IPR006911 -
Mtr1g0978 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 452 494 IPR000225 GO:0005515
Mtr1g0978 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 775 817 IPR000225 GO:0005515
Mtr1g0978 844 SUPERFAMILY ARM repeat 94 833 IPR016024 -
Mtr1g0978 844 Gene3D - 70 322 IPR011989 -
Mtr1g0978 844 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 22 844 - -
Mtr1g0978 844 Gene3D - 640 843 IPR011989 -
Mtr1g0978 844 Gene3D - 395 639 IPR011989 -
Mtr1g0978 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 177 210 IPR000225 GO:0005515
Mtr1g0978 844 SMART arm_5 441 481 IPR000225 GO:0005515
Mtr1g0978 844 SMART arm_5 250 293 IPR000225 GO:0005515
Mtr1g0978 844 SMART arm_5 805 841 IPR000225 GO:0005515
Mtr1g0978 844 SMART arm_5 166 208 IPR000225 GO:0005515
Mtr1g0978 844 SMART arm_5 764 804 IPR000225 GO:0005515
Mtr1g0978 844 SMART arm_5 209 249 IPR000225 GO:0005515
Mtr1g0978 844 SMART arm_5 125 165 IPR000225 GO:0005515
Mtr1g0978 844 MobiDBLite consensus disorder prediction 59 86 - -
Mtr1g0978 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 136 178 IPR000225 GO:0005515
Mtr1g0978 844 SUPERFAMILY ARM repeat 397 711 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0978 125 326 U-box Gene Family AT2G23140 28.099 1.06e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0978 - - lang:109360684 1073.15