Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0966 ATGAACACTTATTATCATGTTATGGGATTATTGTTGCTCGTATGTTACCTTAATACGTTGGTGGTGGAGTTTGCACATGGAACAACAGATTTGGTTAACTATCCACAAGATTTAACATGTGGAAATCAAGTTATCAAATTCCCTTTCCATATCAAAAACCAAAATCCAAATCCATCTTTGCATGGCTATCCAGATTTTGAGTTATTTTGTTCATCAAATAATGAAACTATGATTGAACTTCCTTACAAAGTGAAACTCAATGTTAAGAACATTGACTACAAACACCAAACCATTGAACTATTTGACCCACAAAGTTGTCTTTACAAACATATCCACAACCTCAATCTTTCAGAATCTCATTTCAACTACTTGAAACATGACTACGATGATTTTGTCGACCATCACTTTTTCAATTGTTCGCTTTTGAATAGAGATTGGATGGATTCCTATTCGGTTTCGTGTCTAAGAACTTCCACCTCTCAAATATATGCTATCCCTTCTAGTACAAATATTGAAGACCTTCCTCTTTCGTTTTGCACCAAAATGTTTAATGTTTCATTCAAACCTTCTGATTCTCTTCGTTTGACGTGGTCTGAGCCTAATTGTAAACACTGTGAATCAAAAGGAAAAATATGTGGTTGGAAAAATACTACTAGTAACAGTGACAACAAGGAAGTAGATTGTGTCCCAAAAAACAAGAAAGGTTCATCAAAGGCTCTAGTAAACACAGGATCAATTTTAGGATCGTTGTTTTTCATCTTGTTGATTGGTGGAGTCTTCCATATTTATGACTCTTACATACTAAGGAAAGAAAAACAAGCAATTATAGAAAAGTTTTTAGAAGACTATAGAGCTCTTAAGCCAACCAGATACTCTTATGTAGAAATTAAGAGAATCACAAATAATTTCGGGGATATGTTAGGACAAGGAGCCTATGGAACTGTTTATAAAGGAAGCATTTCAAAAGAATTTAGTGTTGCTGTGAAGATACTAAATGTTTCTCAGGGAAATGGCCAAGACTTCCTAAATGAAGTGGGTACAATGGGTAGAATACACCATGTTAATATTGTTCGTTTGATCGGTTTTTGCGCCGATGGCTTTAAAAGAGCTCTTATTTATGAGTTTTTGCCAAATGGTTCTCTACAAAAGTTCATAAATTCACCGGACAACAAGAAAAACTTCCTTGGCTGGAAAAAGTTGCACGAAATTGCTTTAGGAATAGCTAAAGGAATTGAATATCTTCATCAAGGTTGTGATCAACGCATCCTCCATTTTGATATCAAGCCACAAAATGTGTTACTTGACCACAACTTTATTCCAAAAATATGTGATTTTGGTCTAGCTAAATTATGTTCAAGGGATCAGAGCATAGTGTCAATGACCGCGGCTAGAGGAACTTTGGGCTACATTGCTCCAGAAGTTTTTTCAAGGAACTTTGGAAACGTGTCTTTCAAATCGGATGTTTATAGTTATGGAATGATGTTGCTTGAAACGATAGGAGGGAAGAAGATCACAGAGGATTTAGAGGAAAACAGTAGTCATGTTTACTATCCGGAGTGGATTTATAATCTTATAGATGATGAAGAGGAAATGAGAATTCATGTTGATGATGAAGGGGATGAAAAAATTGCAAGAAAAATGGCCATCGTGGGACTTTGGTGCATTCAGTGGCATGCTATGGATCGACCATCAATGCAAATGGTGGTTCAAATGTTGGAGGGAGATGAAGACAAAACTCCAATACCTCCAAATCCCTTTGCTTCTCAATCTAGACGGCCTAGGAAAAATAGTGCAATTGCAACTACGGGACATCTAGCACAAGATTTAGATGTGATTCACGAGTTAGATTGA 1851 0.3609 MNTYYHVMGLLLLVCYLNTLVVEFAHGTTDLVNYPQDLTCGNQVIKFPFHIKNQNPNPSLHGYPDFELFCSSNNETMIELPYKVKLNVKNIDYKHQTIELFDPQSCLYKHIHNLNLSESHFNYLKHDYDDFVDHHFFNCSLLNRDWMDSYSVSCLRTSTSQIYAIPSSTNIEDLPLSFCTKMFNVSFKPSDSLRLTWSEPNCKHCESKGKICGWKNTTSNSDNKEVDCVPKNKKGSSKALVNTGSILGSLFFILLIGGVFHIYDSYILRKEKQAIIEKFLEDYRALKPTRYSYVEIKRITNNFGDMLGQGAYGTVYKGSISKEFSVAVKILNVSQGNGQDFLNEVGTMGRIHHVNIVRLIGFCADGFKRALIYEFLPNGSLQKFINSPDNKKNFLGWKKLHEIALGIAKGIEYLHQGCDQRILHFDIKPQNVLLDHNFIPKICDFGLAKLCSRDQSIVSMTAARGTLGYIAPEVFSRNFGNVSFKSDVYSYGMMLLETIGGKKITEDLEENSSHVYYPEWIYNLIDDEEEMRIHVDDEGDEKIARKMAIVGLWCIQWHAMDRPSMQMVVQMLEGDEDKTPIPPNPFASQSRRPRKNSAIATTGHLAQDLDVIHELD* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0966 616 SUPERFAMILY Protein kinase-like (PK-like) 285 573 IPR011009 -
Mtr1g0966 616 PANTHER RUST RESISTANCE KINASE LR10-RELATED 42 614 IPR045874 GO:0004672
Mtr1g0966 616 MobiDBLite consensus disorder prediction 583 597 - -
Mtr1g0966 616 SMART serkin_6 301 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0966 616 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Mtr1g0966 616 MobiDBLite consensus disorder prediction 575 597 - -
Mtr1g0966 616 Pfam Protein kinase domain 305 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0966 616 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Mtr1g0966 616 Gene3D Phosphorylase Kinase; domain 1 276 375 - -
Mtr1g0966 616 ProSiteProfiles Protein kinase domain profile. 301 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0966 616 Gene3D Transferase(Phosphotransferase) domain 1 376 581 - -
Mtr1g0966 616 PANTHER RECEPTOR-LIKE KINASE 42 614 - -
Mtr1g0966 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0966 Mtr-Chr1 11137252 11139800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0966 38 589 Receptor kinase-like Gene Family AT1G66910 37.055 5.54e-114 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g0966 Pkinase 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0966 - - mtr:MTR_1g031540 1018.84